Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq45377 132 6e-26 seq1326 132 6e-26 seq1263 132 6e-26 >seq45377 Length=76098 Score = 132 bits (146), Expect = 6e-26 Identities = 179/248 (72%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 145694 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGC 145753 |||||||| ||| ||||| || || || ||| ||| | || |||| | |||| Sbjct 28811 CGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGC 28752 Query 145754 CCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCC 145813 | || | | || | ||| | ||| ||||| | ||||||||| || || |||||||| | Sbjct 28751 CTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACAC 28692 Query 145814 CCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC----C 145869 |||| |||||||| | |||||||||||||||||||| || ||| || | || | Sbjct 28691 CCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGC 28632 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 | ||| | |||| ||||| ||| ||||||||||||||||| | |||| | || ||| Sbjct 28631 A-GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGG 28573 Query 145930 TTCCAGGC 145937 ||||| || Sbjct 28572 TTCCATGC 28565 >seq1326 Length=97166 Score = 132 bits (146), Expect = 6e-26 Identities = 179/248 (72%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 145694 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGC 145753 |||||||| ||| ||||| || || || ||| ||| | || |||| | |||| Sbjct 45048 CGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGC 44989 Query 145754 CCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCC 145813 | || | | || | ||| | ||| ||||| | ||||||||| || || |||||||| | Sbjct 44988 CTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACAC 44929 Query 145814 CCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC----C 145869 |||| |||||||| | |||||||||||||||||||| || ||| || | || | Sbjct 44928 CCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGC 44869 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 | ||| | |||| ||||| ||| ||||||||||||||||| | |||| | || ||| Sbjct 44868 A-GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGG 44810 Query 145930 TTCCAGGC 145937 ||||| || Sbjct 44809 TTCCATGC 44802 >seq1263 Length=68635 Score = 132 bits (146), Expect = 6e-26 Identities = 179/248 (72%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 145694 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGC 145753 |||||||| ||| ||||| || || || ||| ||| | || |||| | |||| Sbjct 46844 CGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGC 46903 Query 145754 CCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCC 145813 | || | | || | ||| | ||| ||||| | ||||||||| || || |||||||| | Sbjct 46904 CTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACAC 46963 Query 145814 CCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGC----C 145869 |||| |||||||| | |||||||||||||||||||| || ||| || | || | Sbjct 46964 CCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGC 47023 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 | ||| | |||| ||||| ||| ||||||||||||||||| | |||| | || ||| Sbjct 47024 A-GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGG 47082 Query 145930 TTCCAGGC 145937 ||||| || Sbjct 47083 TTCCATGC 47090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589714094542960