Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2636 87.8 1e-12 seq1807 87.8 1e-12 seq767 87.8 1e-12 >seq2636 Length=142077 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22145 GCACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGA 22204 ||||||||||||||||||||||| |||||||| | ||||| ||| |||||| || | Sbjct 25762 GCACGGCTTTCACGTGCACGAATTTGGCGACAATACGAACGGCTGCGTGTCGGCTGGCGC 25703 Query 22205 GCATTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGG 22264 ||||| ||||| ||| | |||||||||||| || | || ||||| || || Sbjct 25702 TCATTTCAATCCGTGCAAACGGACCCACGGCGCTCCGGACGACGAGGAGAGGCACGTCGG 25643 Query 22265 CGACTTGGGCAAC 22277 || |||||||| Sbjct 25642 GGATCTGGGCAAC 25630 >seq1807 Length=57471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22145 GCACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGA 22204 ||||||||||||||||||||||| |||||||| | ||||| ||| |||||| || | Sbjct 44074 GCACGGCTTTCACGTGCACGAATTTGGCGACAATACGAACGGCTGCGTGTCGGCTGGCGC 44015 Query 22205 GCATTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGG 22264 ||||| ||||| ||| | |||||||||||| || | || ||||| || || Sbjct 44014 TCATTTCAATCCGTGCAAACGGACCCACGGCGCTCCGGACGACGAGGAGAGGCACGTCGG 43955 Query 22265 CGACTTGGGCAAC 22277 || |||||||| Sbjct 43954 GGATCTGGGCAAC 43942 >seq767 Length=230551 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22145 GCACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGA 22204 ||||||||||||||||||||||| |||||||| | ||||| ||| |||||| || | Sbjct 117568 GCACGGCTTTCACGTGCACGAATTTGGCGACAATACGAACGGCTGCGTGTCGGCTGGCGC 117509 Query 22205 GCATTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGG 22264 ||||| ||||| ||| | |||||||||||| || | || ||||| || || Sbjct 117508 TCATTTCAATCCGTGCAAACGGACCCACGGCGCTCCGGACGACGAGGAGAGGCACGTCGG 117449 Query 22265 CGACTTGGGCAAC 22277 || |||||||| Sbjct 117448 GGATCTGGGCAAC 117436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410550606140036