Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq46594 138 2e-27 seq1520 138 2e-27 seq4616 136 7e-27 seq3090 127 4e-24 >seq46594 Length=67017 Score = 138 bits (152), Expect = 2e-27 Identities = 257/371 (69%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 51819 GGCAGCAAAAGGTTATAGTTATGTTTGCCAGCCTATAGATTATTCAGATAACGTTCACGA 51878 |||| ||||| || |||||| | |||||||| | || ||||| || || | |||| Sbjct 17223 GGCAACAAAAC--TACAGTTATCTCTGCCAGCCAGTTGACTATTCTGACAATCCTTACGA 17166 Query 51879 GGTTAGGATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGA 51938 | | || || |||| |||| | |||| ||||||| | || || | || || | |||| Sbjct 17165 GTTAAGAATCGCCAAAGCACTCTGGTGGTACTATTTCTCTAAGTGCATCGAGTTTATGGA 17106 Query 51939 TACGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCA 51998 || |||| || | | | || || |||||| |||||||||| ||||| || || Sbjct 17105 CACTATATTCTTTGTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCA 17046 Query 51999 TCATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGGC 52058 ||| || ||||| | | | ||||| || | |||||| | | || |||||| | Sbjct 17045 TCACGCCACCATGTTCCCAATTTGGTGGATTGGAGTGAAATGGGTACCAGGTGGTCAGTC 16986 Query 52059 ATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTAT 52118 |||||||| ||| | | || ||||||||||| || || ||||||| || |||||| | Sbjct 16985 GTTTTTTGGCGCTATGATGAACTCTTTTATCCACGTCATCATGTACAGCTACTATGGTTT 16926 Query 52119 G-GC-CGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || |||| | || || ||| ||||| || |||||||| || ||||| || | Sbjct 16925 GAGCTCGCTCG-GGGAGAGCGTCCAG-AAGTACCTGTGGTGGAAGCGGTATCTCACCCGA 16868 Query 52177 ATGCAGTTGGT 52187 ||||| |||| Sbjct 16867 CTGCAGCTGGT 16857 >seq1520 Length=56574 Score = 138 bits (152), Expect = 2e-27 Identities = 257/371 (69%), Gaps = 6/371 (2%) Strand=Plus/Plus Query 51819 GGCAGCAAAAGGTTATAGTTATGTTTGCCAGCCTATAGATTATTCAGATAACGTTCACGA 51878 |||| ||||| || |||||| | |||||||| | || ||||| || || | |||| Sbjct 45851 GGCAACAAAAC--TACAGTTATCTCTGCCAGCCAGTTGACTATTCTGACAATCCTTACGA 45908 Query 51879 GGTTAGGATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGA 51938 | | || || |||| |||| | |||| ||||||| | || || | || || | |||| Sbjct 45909 GTTAAGAATCGCCAAAGCACTCTGGTGGTACTATTTCTCTAAGTGCATCGAGTTTATGGA 45968 Query 51939 TACGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCA 51998 || |||| || | | | || || |||||| |||||||||| ||||| || || Sbjct 45969 CACTATATTCTTTGTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCA 46028 Query 51999 TCATTTTACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGGC 52058 ||| || ||||| | | | ||||| || | |||||| | | || |||||| | Sbjct 46029 TCACGCCACCATGTTCCCAATTTGGTGGATTGGAGTGAAATGGGTACCAGGTGGTCAGTC 46088 Query 52059 ATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTAT 52118 |||||||| ||| | | || ||||||||||| || || ||||||| || |||||| | Sbjct 46089 GTTTTTTGGCGCTATGATGAACTCTTTTATCCACGTCATCATGTACAGCTACTATGGTTT 46148 Query 52119 G-GC-CGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATA 52176 | || |||| | || || ||| ||||| || |||||||| || ||||| || | Sbjct 46149 GAGCTCGCTCG-GGGAGAGCGTCCAG-AAGTACCTGTGGTGGAAGCGGTATCTCACCCGA 46206 Query 52177 ATGCAGTTGGT 52187 ||||| |||| Sbjct 46207 CTGCAGCTGGT 46217 >seq4616 Length=10833 Score = 136 bits (150), Expect = 7e-27 Identities = 258/372 (69%), Gaps = 7/372 (2%) Strand=Plus/Minus Query 51819 GGCAGCAAAAGGTTATAGTTATGTTTGCCAGCCTATAGATTATTCAGATAACGTTCACGA 51878 |||| ||||| || |||||| | |||||||| | || ||||| || || | |||| Sbjct 4662 GGCAACAAAAC--TACAGTTATCTCTGCCAGCCAGTTGACTATTCTGACAATCCTTACGA 4605 Query 51879 GGTTAGGATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGA 51938 | | || || |||| |||| | |||| ||||||| | || || | || || | |||| Sbjct 4604 GTTAAGAATCGCCAAAGCACTCTGGTGGTACTATTTCTCTAAGTGCATCGAGTTTATGGA 4545 Query 51939 TACGGTATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCA 51998 || |||| || | | | || || |||||| |||||||||| ||||| || || Sbjct 4544 CACTATATTCTTTGTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCA 4485 Query 51999 TCATTTTACTATGTTTACTC-TAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 ||| || |||||| | | | ||||| || | |||||| | | || |||||| Sbjct 4484 TCACGCCACCATGTTTCCCAATTTGGTGGATTGGAGTGAAATGGGTACCAGGTGGTCAGT 4425 Query 52058 CATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTA 52117 | |||||||| ||| | | || ||||||||||| || || ||||||| || |||||| Sbjct 4424 CGTTTTTTGGCGCTATGATGAACTCTTTTATCCACGTCATCATGTACAGCTACTATGGTT 4365 Query 52118 TG-GC-CGCTTGTGGTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || || |||| | || || ||| ||||| || |||||||| || ||||| || Sbjct 4364 TGAGCTCGCTCG-GGGAGAGCGTCCAG-AAGTACCTGTGGTGGAAGCGGTATCTCACCCG 4307 Query 52176 AATGCAGTTGGT 52187 | ||||| |||| Sbjct 4306 ACTGCAGCTGGT 4295 >seq3090 Length=107577 Score = 127 bits (140), Expect = 4e-24 Identities = 246/358 (69%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 51832 TATAGTTATGTTTGCCAGCCTATAGATTATTCAGATAACGTTCACGAGGTTAGGATAGCC 51891 || |||||| | || ||||| | || ||||| || || | ||||| | || || ||| Sbjct 9011 TACAGTTATCTCTGTCAGCCAGTTGACTATTCTGACAATCCTTACGAGTTAAGAATCGCC 8952 Query 51892 AGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTC 51951 | ||| | |||| ||||||| | || || | || || | |||| || |||| || Sbjct 8951 AAAGCGCTCTGGTGGTACTATTTCTCAAAGTGCATCGAGTTTATGGACACTATATTCTTT 8892 Query 51952 ATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATG 52011 | | | || || |||||| |||||||||| ||||| || ||||| |||||| Sbjct 8891 GTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCATCACGCCACTATG 8832 Query 52012 TTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGGCATTTTTTGGAGCT 52071 || | | | ||||| || | |||||| | | || |||||| | |||||||| ||| Sbjct 8831 TTCCCAATTTGGTGGATTGGAGTGAAATGGGTACCAGGTGGTCAGTCGTTTTTTGGCGCT 8772 Query 52072 CAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGTATG-GC-CGCTTGTG 52129 | | || ||||||||||| || || ||||| | || |||||| || || |||||| | Sbjct 8771 ATGATGAACTCTTTTATCCACGTCATCATGTATAGCTACTATGGTTTGAGCTCGCTTG-G 8713 Query 52130 GTCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTATAATGCAGTTGGT 52187 || ||| ||||| || |||||||| || ||||| || | ||||| |||| Sbjct 8712 AGAGAGCGTCCAG-AAGTACCTGTGGTGGAAGCGGTATCTCACCCGACTGCAGCTGGT 8656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922629334006960