Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2068 87.8 4e-12 seq1184 87.8 4e-12 seq279 87.8 4e-12 seq249 87.8 4e-12 >seq2068 Length=49630 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||| | ||||| |||||||| |||| |||||| | | || ||| Sbjct 45300 TGCCCGCCGCTGAAGCTGATCATCCTAGACGAGGCCGACAACATGACCACGGCGGCACAG 45241 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 || ||||||||||| || ||||| | | || || || || |||||| | ||| Sbjct 45240 TCAGCCCTCCGCCGCACAATGGAAGTGTGCGCCAAGACCACCCGGTTCTGCCTGATCTGC 45181 Query 254322 AACTACGTGTCGAAGATCATCGC-CCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||| ||||| | |||||| | ||| | || ||||||||||||||| |||| Sbjct 45180 AACTATGTGTCCAGAATCATCCCGCCCATTAGC-AGTCGGTGCGCCAAGTTCAGATT 45125 >seq1184 Length=90550 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||| | ||||| |||||||| |||| |||||| | | || ||| Sbjct 34183 TGCCCGCCGCTGAAGCTGATCATCCTAGACGAGGCCGACAACATGACCACGGCGGCACAG 34124 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 || ||||||||||| || ||||| | | || || || || |||||| | ||| Sbjct 34123 TCAGCCCTCCGCCGCACAATGGAAGTGTGCGCCAAGACCACCCGGTTCTGCCTGATCTGC 34064 Query 254322 AACTACGTGTCGAAGATCATCGC-CCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||| ||||| | |||||| | ||| | || | |||||||||||||| |||| Sbjct 34063 AACTATGTGTCTAGAATCATCCCACCCATTAGCAGC-CGGTGCGCCAAGTTCAGATT 34008 >seq279 Length=57057 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||| | ||||| |||||||| |||| |||||| | | || ||| Sbjct 56769 TGCCCGCCGCTGAAGCTGATCATCCTAGACGAGGCCGACAACATGACCACGGCGGCACAG 56710 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 || ||||||||||| || ||||| | | || || || || |||||| | ||| Sbjct 56709 TCAGCCCTCCGCCGCACAATGGAAGTGTGCGCCAAGACCACCCGGTTCTGCCTGATCTGC 56650 Query 254322 AACTACGTGTCGAAGATCATCGC-CCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||| ||||| | |||||| | ||| | || | |||||||||||||| |||| Sbjct 56649 AACTATGTGTCCAGAATCATCCCGCCCATTAGCAGC-CGGTGCGCCAAGTTCAGATT 56594 >seq249 Length=183987 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||| | ||||| |||||||| |||| |||||| | | || ||| Sbjct 166317 TGCCCGCCGCTGAAGCTGATCATCCTAGACGAGGCCGACAACATGACCACGGCGGCACAG 166376 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 || ||||||||||| || ||||| | | || || || || |||||| | ||| Sbjct 166377 TCAGCCCTCCGCCGCACAATGGAAGTGTGCGCCAAGACCACCCGGTTCTGCCTGATCTGC 166436 Query 254322 AACTACGTGTCGAAGATCATCGC-CCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATT 254377 ||||| ||||| | |||||| | ||| | || | |||||||||||||| |||| Sbjct 166437 AACTATGTGTCCAGAATCATCCCGCCCATTAGCAGC-CGGTGCGCCAAGTTCAGATT 166492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073089882204032