Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1326 158 1e-33 seq45377 156 4e-33 seq1263 156 4e-33 >seq1326 Length=97166 Score = 158 bits (174), Expect = 1e-33 Identities = 237/334 (71%), Gaps = 6/334 (2%) Strand=Plus/Minus Query 20876 AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAAC 20935 ||||| ||| |||||||| ||||| || | ||||| |||| | || | Sbjct 45107 AATCTCCAGTTTAGGAAACGGGCGCGGCTGCCGGCTGAGCTGCTCGCGCAGCGCGGCATC 45048 Query 20936 GTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCC 20995 ||||||| |||| ||||| || || || | |||||||||||| || | | |||||||| Sbjct 45047 GTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCC 44988 Query 20996 CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 || || | ||| |||| || || || || |||||||||||||| ||||| || || || Sbjct 44987 TGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACC 44928 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC----CA 21111 || ||||||||||| || | ||||||||||||||| |||||| || || || Sbjct 44927 CAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGCA 44868 Query 21112 CGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGT 21171 ||| | ||| ||| |||||| || || || |||||| | || | ||||||| Sbjct 44867 -GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGGT 44809 Query 21172 TCCACGCGCACATAACGATGCGCCGATCG-TGGG 21204 |||| || | || || ||||| |||||| |||| Sbjct 44808 TCCATGCTGAGATCACTATGCGACGATCGCTGGG 44775 >seq45377 Length=76098 Score = 156 bits (172), Expect = 4e-33 Identities = 233/329 (71%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 20876 AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAAC 20935 ||||| ||| |||||||| ||||| || | ||||| |||| | || | Sbjct 28870 AATCTCCAGTTTAGGAAACGGGCGCGGCTGCCGGCTGAGCTGCTCGCGCAGCGCGGCATC 28811 Query 20936 GTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCC 20995 ||||||| |||| ||||| || || || | |||||||||||| || | | |||||||| Sbjct 28810 GTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCC 28751 Query 20996 CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 || || | ||| |||| || || || || |||||||||||||| ||||| || || || Sbjct 28750 TGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACC 28691 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC----CA 21111 || ||||||||||| || | ||||||||||||||| |||||| || || || Sbjct 28690 CAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGCA 28631 Query 21112 CGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGT 21171 ||| | ||| ||| |||||| || || || |||||| | || | ||||||| Sbjct 28630 -GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGGT 28572 Query 21172 TCCACGCGCACATAACGATGCGCCGATCG 21200 |||| || | || || ||||| |||||| Sbjct 28571 TCCATGCTGAGATCACTATGCGACGATCG 28543 >seq1263 Length=68635 Score = 156 bits (172), Expect = 4e-33 Identities = 233/329 (71%), Gaps = 5/329 (2%) Strand=Plus/Plus Query 20876 AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAAC 20935 ||||| ||| |||||||| ||||| || | ||||| |||| | || | Sbjct 46785 AATCTCCAGTTTAGGAAACGGGCGCGGCTCCCGGCTGAGCTGCTCGCGCAGCGCGGCATC 46844 Query 20936 GTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCC 20995 ||||||| |||| ||||| || || || | |||||||||||| || | | |||||||| Sbjct 46845 GTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCC 46904 Query 20996 CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCC 21055 || || | ||| |||| || || || || |||||||||||||| ||||| || || || Sbjct 46905 TGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACC 46964 Query 21056 GAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC----CA 21111 || ||||||||||| || | ||||||||||||||| |||||| || || || Sbjct 46965 CAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGCA 47024 Query 21112 CGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGT 21171 ||| | ||| ||| |||||| || || || |||||| | || | ||||||| Sbjct 47025 -GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGGT 47083 Query 21172 TCCACGCGCACATAACGATGCGCCGATCG 21200 |||| || | || || ||||| |||||| Sbjct 47084 TCCATGCTGAGATCACTATGCGACGATCG 47112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427519630367520