Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq11958 91.5 1e-13 seq4909 91.5 1e-13 seq47051 87.8 1e-12 seq29719 87.8 1e-12 seq12926 87.8 1e-12 seq12609 87.8 1e-12 seq11651 82.4 5e-11 seq7454 82.4 5e-11 seq5233 82.4 5e-11 seq4325 82.4 5e-11 >seq11958 Length=54492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || |||||||| ||| || | || | | | || || || ||| | ||||| Sbjct 32744 TGGCCTTCGCAGCTGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCTG 32801 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || ||||| || Sbjct 32802 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGCCGCGA 32861 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| ||||||||| || || |||| Sbjct 32862 CGAAGGCCTCCACACTGACTTTGCCTGCCTGATGTT 32897 >seq4909 Length=66758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || || ||||| ||| || | |||| | | || || || ||| | ||||| Sbjct 51502 TGGCCTTCGCAGCCGTTGAGGGCATCTT--TTTCAGCGGCAGCTTCGCCGCCGTCTTCTG 51445 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || ||||| || Sbjct 51444 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGCCGCGA 51385 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| ||||||||| || || |||| Sbjct 51384 CGAAGGCCTCCACACTGACTTTGCCTGCCTGATGTT 51349 >seq47051 Length=145068 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || || ||||| ||| || | || | | | || || || ||| | ||||| Sbjct 107639 TGGCCTTCGCAGCCGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCTG 107582 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || || ||||| Sbjct 107581 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGTGA 107522 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| ||||||||||| || |||| Sbjct 107521 CGAAGGCCTCCACACCGACTTTGCTTGCCTGATGTT 107486 >seq29719 Length=10979 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 22748 TGGCCTTTGC-GGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCT 22804 ||||||| || ||| ||||| ||| || | || | | | || || || ||| | |||| Sbjct 3561 TGGCCTTCGCAGGCCGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCT 3618 Query 22805 GGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG-CCGT 22863 |||||||||| || ||||||||||| || | || ||||||| | || || |||| Sbjct 3619 GGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCCGT 3678 Query 22864 GACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||||| || ||| |||||||||||| || |||| Sbjct 3679 GACGAAGGCCTCCACACTGACTTTGCTTGCCTGATGTT 3716 >seq12926 Length=13411 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || || ||||| ||| || | || | | | || || || ||| | ||||| Sbjct 8038 TGGCCTTCGCAGCCGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCTG 7981 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || ||||| || Sbjct 7980 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGCCGCGA 7921 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| ||||||||| || || |||| Sbjct 7920 CGAAGGCCTCCACACTGACTTTGCCTGCCTGATGTT 7885 >seq12609 Length=34370 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || || ||||| ||| || | || | | | || || || ||| | ||||| Sbjct 29006 TGGCCTTCGCAGCCGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCTG 28949 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || ||||| || Sbjct 28948 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGCCGCGA 28889 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| ||||||||| || || |||| Sbjct 28888 CGAAGGCCTCCACACTGACTTTGCCTGCCTGATGTT 28853 >seq11651 Length=16128 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || |||||||| ||| || | || | | | || || || ||| | ||||| Sbjct 4805 TGGCCTTCGCAGCTGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCTG 4748 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || || || || Sbjct 4747 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGCGA 4688 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| |||||||| || || |||| Sbjct 4687 CGAAGGCCTCCACACCGACTTTGCCTGCCTGATGTT 4652 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || |||||||| ||| || | || | | | || || || ||| | ||||| Sbjct 11312 TGGCCTTCGCAGCTGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCTG 11369 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || || || || Sbjct 11370 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGCGA 11429 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| |||||||| || || |||| Sbjct 11430 CGAAGGCCTCCACACCGACTTTGCCTGCCTGATGTT 11465 >seq7454 Length=56988 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA--TTTGCGGCCATATTCTG 22805 ||||||| || |||||||| ||| || | || | | | || || || ||| | ||||| Sbjct 38076 TGGCCTTCGCAGCTGTTGAGGGCATCTTCTT--CAGCGGCAGCTTCGCCGCCGTCTTCTG 38133 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||||||||| || ||||||||||| || | || ||||||| | || || || || Sbjct 38134 GCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGCGA 38193 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||| || ||| |||||||| || || |||| Sbjct 38194 CGAAGGCCTCCACACCGACTTTGCCTGCCTGATGTT 38229 >seq5233 Length=80866 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 33568 ATACCAGAGATGGGCGACAAGTTTGC-ATCGTTCACGGCCCAGAAGGGCACGTGCGGCAT 33626 ||||| |||| |||||||| || || | | |||||||| |||| ||||| |||||||| Sbjct 55324 ATACCGCAGATTGGCGACAAATTCGCTAGCCGTCACGGCC-AGAAAGGCACCTGCGGCAT 55266 Query 33627 GATGTACGAC--CAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTC 33684 | || | ||| ||||||||||||||| ||| ||| | |||||| || || Sbjct 55265 --TCGACTGCAGCAGCAGGACATGCCGTTCACCTGCGAAGGCATCACCCCGGATATAATC 55208 Query 33685 ATCAACCCGCATGCGTTCCCCTCGCGCATGACGGT 33719 || || ||||| || |||| ||||| ||||| || Sbjct 55207 ATTAATCCGCACGCTATCCCGTCGCGTATGACAGT 55173 >seq4325 Length=100006 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 33568 ATACCAGAGATGGGCGACAAGTTTGC-ATCGTTCACGGCCCAGAAGGGCACGTGCGGCAT 33626 ||||| |||| |||||||| || || | | |||||||| |||| ||||| |||||||| Sbjct 76180 ATACCGCAGATTGGCGACAAATTCGCTAGCCGTCACGGCC-AGAAAGGCACCTGCGGCAT 76122 Query 33627 GATGTACGAC--CAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTC 33684 | || | ||| ||||||||||||||| ||| ||| | |||||| || || Sbjct 76121 --TCGACTGCAGCAGCAGGACATGCCGTTCACCTGCGAAGGCATCACCCCGGATATAATC 76064 Query 33685 ATCAACCCGCATGCGTTCCCCTCGCGCATGACGGT 33719 || || ||||| || |||| ||||| ||||| || Sbjct 76063 ATTAATCCGCACGCTATCCCGTCGCGTATGACAGT 76029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356020106309122