Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq47998 84.2 3e-11 seq45965 84.2 3e-11 seq5873 84.2 3e-11 >seq47998 Length=32476 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 77360 CCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGAGGCTGGCGA 77419 |||||||||||| ||||||||||||||||||||| ||||| || ||||| || | || Sbjct 4437 CCAGCAGGGTGGTGTAGCACAGGTTGTGGGCCATCATGATTGATGGGTACAGAGAAGAGA 4378 Query 77420 AGTCGAAGACCGCCA-CGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGACGGTGGCA 77478 |||| | || | ||| || | |||||||||| ||| || |||| || |||||| Sbjct 4377 AGTCCAGAGTAGCAATCGGTGT-GGTGTAGTAGCCTTTCACAGGTTCGATCACTGTGGCA 4319 Query 77479 CCC 77481 ||| Sbjct 4318 CCC 4316 >seq45965 Length=78355 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 77360 CCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGAGGCTGGCGA 77419 |||||||||||| ||||||||||||||||||||| ||||| || ||||| || | || Sbjct 76694 CCAGCAGGGTGGTGTAGCACAGGTTGTGGGCCATCATGATTGATGGGTACAGAGAAGAGA 76635 Query 77420 AGTCGAAGACCGCCA-CGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGACGGTGGCA 77478 |||| | || | ||| || | |||||||||| ||| || |||| || |||||| Sbjct 76634 AGTCCAGAGTAGCAATCGGTGT-GGTGTAGTAGCCTTTCACAGGTTCGATCACTGTGGCA 76576 Query 77479 CCC 77481 ||| Sbjct 76575 CCC 76573 >seq5873 Length=5620 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 77360 CCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGAGGCTGGCGA 77419 |||||||||||| ||||||||||||||||||||| ||||| || ||||| || | || Sbjct 3622 CCAGCAGGGTGGTGTAGCACAGGTTGTGGGCCATCATGATTGACGGGTACAGAGAAGAGA 3563 Query 77420 AGTCGAAGACCGCCA-CGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGACGGTGGCA 77478 |||| | || | ||| || | |||||||||| ||| || |||| || |||||| Sbjct 3562 AGTCCAGAGTAGCAATCGGTGT-GGTGTAGTAGCCTTTCACAGGTTCGATCACTGTGGCA 3504 Query 77479 CCC 77481 ||| Sbjct 3503 CCC 3501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770876270192880