Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq10232 84.2 2e-11 seq5620 84.2 2e-11 seq2451 84.2 2e-11 >seq10232 Length=31523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || ||||| | | |||| || | ||| |||||| || | |||||| || | Sbjct 29858 CGCCACCGCGCAGCCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAG 29799 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | | || | |||| |||| |||||||| ||||| |||| ||||| || || | || Sbjct 29798 ATAGAGTCCTGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCG 29739 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| | ||||| || | | ||||||| || ||| | Sbjct 29738 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTAGGCTCAA 29679 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || || || ||||| ||||||||||| Sbjct 29678 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCAT 29630 >seq5620 Length=52182 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || ||||| | | |||| || | ||| |||||| || | |||||| || | Sbjct 11598 CGCCACCGCGCAGCCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAG 11539 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | | || | |||| |||| |||||||| ||||| |||| ||||| || || | || Sbjct 11538 ATAGAGTCCTGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCG 11479 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| | ||||| || | | ||||||| || ||| | Sbjct 11478 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTAGGCTCAA 11419 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || || || ||||| ||||||||||| Sbjct 11418 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCAT 11370 >seq2451 Length=180161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || ||||| | | |||| || | ||| |||||| || | |||||| || | Sbjct 141585 CGCCACCGCGCAGCCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAG 141644 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 | | || | |||| |||| |||||||| ||||| |||| ||||| || || | || Sbjct 141645 ATAGAGTCCTGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCG 141704 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | || || || || |||| | ||||| || | | ||||||| || ||| | Sbjct 141705 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTAGGCTCAA 141764 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || || || || ||||| ||||||||||| Sbjct 141765 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCAT 141813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381141042100092