Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq49094 93.3 4e-14 seq47908 93.3 4e-14 seq4339 93.3 4e-14 >seq49094 Length=36862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || |||||||| |||||| Sbjct 21540 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 21481 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| || || || ||||| |||| ||||| |||||||| || || Sbjct 21480 AGAGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGCGG 21422 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 21421 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 21362 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 21361 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 21314 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || |||||||| |||||| Sbjct 22224 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 22165 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| || || || ||||| |||| ||||| |||||||| || || Sbjct 22164 AGAGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGCGG 22106 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 22105 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 22046 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 22045 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 21998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || ||||||||||| ||| Sbjct 21996 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAATCACTC 21937 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || ||||| |||| ||||| ||||| || || || Sbjct 21936 AGAGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGCGG 21878 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 21877 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 21818 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 21817 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 21770 >seq47908 Length=47913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || |||||||| |||||| Sbjct 8478 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 8419 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| || || || ||||| |||| ||||| |||||||| || || Sbjct 8418 AGAGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGCGG 8360 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 8359 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 8300 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 8299 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 8252 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || |||||||| |||||| Sbjct 9162 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 9103 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| || || || ||||| |||| ||||| |||||||| || || Sbjct 9102 AGAGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGCGG 9044 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 9043 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 8984 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 8983 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 8936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || ||||||||||| ||| Sbjct 8934 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAATCACTC 8875 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || ||||| |||| ||||| ||||| || || || Sbjct 8874 AGAGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGCGG 8816 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 8815 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 8756 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 8755 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 8708 >seq4339 Length=44113 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || |||||||| |||||| Sbjct 37061 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 37120 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| || || || ||||| |||| ||||| |||||||| || || Sbjct 37121 AGAGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGCGG 37179 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 37180 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 37239 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 37240 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 37287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || |||||||| |||||| Sbjct 37745 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 37804 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | ||||| || || || ||||| |||| ||||| |||||||| || || Sbjct 37805 AGAGTGCGTCCA-TCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCCGGCGG 37863 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 37864 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 37923 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 37924 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 37971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| ||| | |||| || || || || ||||||||||| ||| Sbjct 37289 CCTCCACGCAGACGCAGAACCAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAATCACTC 37348 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || || || ||||| |||| ||||| ||||| || || || Sbjct 37349 AGAGTGCGTCCA-TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGCGG 37407 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | ||||| |||| || || Sbjct 37408 GATGCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGCTGGGCTCAAC 37467 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||| | || || ||||| || ||||| Sbjct 37468 CTCCAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 37515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506702750923680