Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10232 87.8 1e-12 seq5620 87.8 1e-12 seq2451 87.8 1e-12 >seq10232 Length=31523 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || || ||||| || |||| | || |||| || | ||| Sbjct 29832 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTCCTGCCGTCCTCCAGCTGT 29773 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| || || ||||| || || || || ||||| || ||| Sbjct 29772 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 29713 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || |||||| || || || | ||| ||||| || || || Sbjct 29712 GCCTTGACATTGTCGATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTG 29653 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||||||||| Sbjct 29652 AGGGTCTTCACGAAAATTTGCAT 29630 >seq5620 Length=52182 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || || ||||| || |||| | || |||| || | ||| Sbjct 11572 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTCCTGCCGTCCTCCAGCTGT 11513 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| || || ||||| || || || || ||||| || ||| Sbjct 11512 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 11453 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || |||||| || || || | ||| ||||| || || || Sbjct 11452 GCCTTGACATTGTCGATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTG 11393 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||||||||| Sbjct 11392 AGGGTCTTCACGAAAATTTGCAT 11370 >seq2451 Length=180161 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || || ||||| || |||| | || |||| || | ||| Sbjct 141611 TGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGATAGAGTCCTGCCGTCCTCCAGCTGT 141670 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||| || || ||||| || || || || ||||| || ||| Sbjct 141671 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 141730 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || |||||| || || || | ||| ||||| || || || Sbjct 141731 GCCTTGACATTGTCGATAGTGTCGCTAGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTG 141790 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||||||||| Sbjct 141791 AGGGTCTTCACGAAAATTTGCAT 141813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361962143062734