Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq45287 107 2e-18 seq2636 105 6e-18 seq10232 104 2e-17 seq5620 104 2e-17 seq2451 104 2e-17 seq1807 104 2e-17 seq767 104 2e-17 seq45308 95.1 1e-14 seq48 95.1 1e-14 seq20824 93.3 3e-14 >seq45287 Length=50511 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | |||| |||||| || |||||||| || |||||||| || | Sbjct 2221 CCACCGCGCAGCCGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAT 2280 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | ||||||||||| || || || | || || | ||||||||| || Sbjct 2281 AGAGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGTGGG 2340 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| ||||| ||| || | | ||| || |||| |||||| Sbjct 2341 ATGCCCTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCGCTAGGCTCAACC 2400 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||||| || |||||||| |||||||| Sbjct 2401 TCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTGACAAATATTTGCAT 2447 >seq2636 Length=142077 Score = 105 bits (116), Expect = 6e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||||||||| |||||||||| ||| || |||| ||||||||||| | | | Sbjct 25627 GACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTT 25686 Query 21198 CGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 || || || || |||| || ||| ||||||||| | ||||||| || ||||| Sbjct 25687 GCACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTG 25746 Query 21258 AACGTGAAAGCCGTGCAGTCCGCGCGGCAGG 21288 ||||||||||||||| ||| ||| |||| Sbjct 25747 CACGTGAAAGCCGTGCTTGCCGGGCGCCAGG 25777 >seq10232 Length=31523 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | |||| ||||| || |||||||| || |||||||| || | Sbjct 29856 CCACCGCGCAGCCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGAT 29797 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || |||||||||||||||| || ||| | || || | |||||| ||| || Sbjct 29796 AGAGTCCTGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 29737 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || || || || | | ||| ||| |||| |||||| Sbjct 29736 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTAGGCTCAACC 29677 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || || || ||||||||||| Sbjct 29676 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCAT 29630 >seq5620 Length=52182 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | |||| ||||| || |||||||| || |||||||| || | Sbjct 11596 CCACCGCGCAGCCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGAT 11537 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || |||||||||||||||| || ||| | || || | |||||| ||| || Sbjct 11536 AGAGTCCTGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 11477 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || || || || | | ||| ||| |||| |||||| Sbjct 11476 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTAGGCTCAACC 11417 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || || || ||||||||||| Sbjct 11416 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCAT 11370 >seq2451 Length=180161 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | |||| ||||| || |||||||| || |||||||| || | Sbjct 141587 CCACCGCGCAGCCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGAT 141646 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || |||||||||||||||| || ||| | || || | |||||| ||| || Sbjct 141647 AGAGTCCTGCCGTCCTCCAGCTGTTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 141706 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || || || || | | ||| ||| |||| |||||| Sbjct 141707 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGCTAGGCTCAACC 141766 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || || || ||||||||||| Sbjct 141767 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCAT 141813 >seq1807 Length=57471 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 |||||||||||||| |||||||||| ||| || |||| ||||||||||| | | | Sbjct 43940 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 43999 Query 21199 GTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 21258 || || || || |||| || ||| ||||||||| | ||||||| || ||||| Sbjct 44000 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 44059 Query 21259 ACGTGAAAGCCGTGCAGTCCGCGCGGCAGG 21288 ||||||||||||||| ||| ||| |||| Sbjct 44060 ACGTGAAAGCCGTGCTTGCCGGGCGCCAGG 44089 >seq767 Length=230551 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 |||||||||||||| |||||||||| ||| || |||| ||||||||||| | | | Sbjct 117434 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 117493 Query 21199 GTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 21258 || || || || |||| || ||| ||||||||| | ||||||| || ||||| Sbjct 117494 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 117553 Query 21259 ACGTGAAAGCCGTGCAGTCCGCGCGGCAGG 21288 ||||||||||||||| ||| ||| |||| Sbjct 117554 ACGTGAAAGCCGTGCTTGCCGGGCGCCAGG 117583 >seq45308 Length=123861 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | |||| ||||| || |||||||| || ||||| || || | Sbjct 119553 CCACCGCGCAGCCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATATTATAGTCAGAT 119494 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || ||||||||||||| || || || | || | | |||||| || || Sbjct 119493 AGAGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 119434 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| |||||| ||| || | | ||| || |||| |||||| Sbjct 119433 ATGCCCTCCTTGTCCTGGATTTTCGCTTTCACATTGTCGATGGTGTCGCTAGGCTCAACC 119374 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || |||| || |||||||| |||||||| Sbjct 119373 TCAAGTGTGATGGTCTTGCCCGTTAGGGTCTTGACAAATATTTGCAT 119327 >seq48 Length=38877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | |||| ||||| || |||||||| || ||||| || || | Sbjct 33797 CCACCGCGCAGCCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATATTATAGTCAGAT 33738 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || ||||||||||||| || || || | || | | |||||| || || Sbjct 33737 AGAGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 33678 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| |||||| ||| || | | ||| || |||| |||||| Sbjct 33677 ATGCCCTCCTTGTCCTGGATTTTCGCTTTCACATTGTCGATGGTGTCGCTAGGCTCAACC 33618 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || |||| || |||||||| |||||||| Sbjct 33617 TCAAGTGTGATGGTCTTGCCCGTTAGGGTCTTGACAAATATTTGCAT 33571 >seq20824 Length=12435 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 |||||||||||||| |||||||||| ||| || |||| ||||||||| | | ||| Sbjct 7223 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGGGGTCCGTTTGC 7282 Query 21199 GTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 21258 || || || || |||| | ||| ||||||||| | ||||||| || ||||| Sbjct 7283 -ACGGATTGAAATGAGCGCC-ACCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 7340 Query 21259 ACGTGAAAGCCGTGCAGTCCGCGCGGCAGG 21288 ||||||||||||||| ||| ||| |||| Sbjct 7341 ACGTGAAAGCCGTGCTTGCCGGGCGCCAGG 7370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414324343152556