Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2636 96.9 3e-15 seq1807 96.9 3e-15 seq767 96.9 3e-15 seq20824 84.2 2e-11 >seq2636 Length=142077 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 22334 TGCCGCGCGGCTTGCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCA 22393 || ||| |||| |||||| ||||||||||||||||||||||||| | || || ||| Sbjct 25775 TGGCGCCCGGCAAGCACGGCTTTCACGTGCACGAATTTGGCGACAATACGAACGGCTGCG 25716 Query 22394 CGTCGGCAGGCGAGCACTTTAACCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCGG 22453 |||||| |||| || || || || | ||| || ||||| || |||| | || Sbjct 25715 TGTCGGCTGGCGCTCATTTCAATCCGTGCAAACGGACCCACGGCGCTCCGGACGACGAGG 25656 Query 22454 AGCGTCACGTCGGCGATTTGGGCAACGT 22481 || | |||||||| ||| |||||||||| Sbjct 25655 AGAGGCACGTCGGGGATCTGGGCAACGT 25628 >seq1807 Length=57471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 22334 TGCCGCGCGGCTTGCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCA 22393 || ||| |||| |||||| ||||||||||||||||||||||||| | || || ||| Sbjct 44087 TGGCGCCCGGCAAGCACGGCTTTCACGTGCACGAATTTGGCGACAATACGAACGGCTGCG 44028 Query 22394 CGTCGGCAGGCGAGCACTTTAACCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCGG 22453 |||||| |||| || || || || | ||| || ||||| || |||| | || Sbjct 44027 TGTCGGCTGGCGCTCATTTCAATCCGTGCAAACGGACCCACGGCGCTCCGGACGACGAGG 43968 Query 22454 AGCGTCACGTCGGCGATTTGGGCAACGT 22481 || | |||||||| ||| |||||||||| Sbjct 43967 AGAGGCACGTCGGGGATCTGGGCAACGT 43940 >seq767 Length=230551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 22334 TGCCGCGCGGCTTGCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCA 22393 || ||| |||| |||||| ||||||||||||||||||||||||| | || || ||| Sbjct 117581 TGGCGCCCGGCAAGCACGGCTTTCACGTGCACGAATTTGGCGACAATACGAACGGCTGCG 117522 Query 22394 CGTCGGCAGGCGAGCACTTTAACCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCGG 22453 |||||| |||| || || || || | ||| || ||||| || |||| | || Sbjct 117521 TGTCGGCTGGCGCTCATTTCAATCCGTGCAAACGGACCCACGGCGCTCCGGACGACGAGG 117462 Query 22454 AGCGTCACGTCGGCGATTTGGGCAACGT 22481 || | |||||||| ||| |||||||||| Sbjct 117461 AGAGGCACGTCGGGGATCTGGGCAACGT 117434 >seq20824 Length=12435 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 22334 TGCCGCGCGGCTTGCACGGTTTTCACGTGCACGAATTTGGCGACACAAGCAATGGGTGCA 22393 || ||| |||| |||||| ||||||||||||||||||||||||| | || || ||| Sbjct 7368 TGGCGCCCGGCAAGCACGGCTTTCACGTGCACGAATTTGGCGACAATACGAACGGCTGCG 7309 Query 22394 CGTCGGCAGGCGAGCACTTTAACCCTACGCACCGGCAACATGGCGCGCCTGACGCTGCGG 22453 ||||| |||| || || || || ||| | | | ||||| || |||| | || Sbjct 7308 TGTCGG-TGGCGCTCATTTCAATCC-GTGCAAACGGACCCCGGCGCTCCGGACGACGAGG 7251 Query 22454 AGCGTCACGTCGGCGATTTGGGCAACGT 22481 || | |||||||| ||| |||||||||| Sbjct 7250 AGAGGCACGTCGGGGATCTGGGCAACGT 7223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419335737981894