Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq38514 125 6e-24 seq16107 123 2e-23 seq4360 114 1e-20 seq10795 111 1e-19 seq37119 104 2e-17 >seq38514 Length=13946 Score = 125 bits (138), Expect = 6e-24 Identities = 98/116 (84%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||||||||| ||||| |||||||| || ||||| | ||| | ||| ||||||| ||| Sbjct 11402 TTGAACAGCACAACGCCGACGTTGCC-CGATAGTCCGGGTCGACAACGGCCGCGCCAACG 11460 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||||||||||||||| | |||||||| || ||||| ||||| ||||||||||| || Sbjct 11461 TCGATGAAGTGCTTGGCGGCCAGGCCTGACCGGGGCGCCACCCGGCCGTAGCAGCC 11516 >seq16107 Length=8295 Score = 123 bits (136), Expect = 2e-23 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||||||||| ||||| |||||||| || ||||| | ||| | || || ||||| ||| Sbjct 1910 TTGAACAGCACAACGCCGACGTTGCCCCGATAGTCCGGGTCGACAACCCCGGCGCCAACG 1969 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||||||||||||||| | |||||||| || ||||| ||||| ||||||||||| || Sbjct 1970 TCGATGAAGTGCTTGGCGGCCAGGCCTGACCGGGGCGCCACCCGGCCGTAGCAGCC 2025 >seq4360 Length=131182 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||||||||| || || ||| |||| || ||||| | ||| | || || ||||| ||| Sbjct 99467 TTGAACAGCACAACACCGACGCTGCCCCGATAGTCCGGGTCGACAACCCCGGCGCCAACG 99408 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||||||||||||||| | |||||||| || ||||| ||||| ||||||||||| || Sbjct 99407 TCGATGAAGTGCTTGGCGGCCAGGCCTGACCGGGGCGCCACCCGGCCGTAGCAGCC 99352 >seq10795 Length=38037 Score = 111 bits (122), Expect = 1e-19 Identities = 95/116 (82%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||||||||| ||||| |||||||| || ||||| | ||| | || || || || ||| Sbjct 10466 TTGAACAGCACAACGCCGACGTTGCCCCGATAGTCCGGGTCGACAACCCCGGCCCCAACG 10407 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||||||||||||||| | |||||||| || | ||| ||||| ||||||||||| || Sbjct 10406 TCGATGAAGTGCTTGGCGGCCAGGCCTGA-CCGGGCGCCACCCGGCCGTAGCAGCC 10352 >seq37119 Length=7555 Score = 104 bits (114), Expect = 2e-17 Identities = 98/119 (82%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCC--A 5702 ||||||||||| ||||| |||||||| || ||||| | ||| | || |||| |||| | Sbjct 4156 TTGAACAGCACAACGCCGACGTTGCCCCGATAGTCCG-GTCGACAAC-CCCGGGCCCCAA 4213 Query 5703 CGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCA-CGCGGCCGTAGCACCC 5760 ||||||||||||||||| | |||||||| || ||||| |||| | ||||||||||| || Sbjct 4214 CGTCGATGAAGTGCTTGGCGGCCAGGCCTGA-CGGGGCGCCACCCCGGCCGTAGCAGCC 4271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429796664903888