Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq45377 87.8 1e-12 seq1326 87.8 1e-12 seq1263 87.8 1e-12 >seq45377 Length=76098 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 25445 GTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTA 25504 ||| |||||||| || || || ||||| |||||||| | | || || || || | Sbjct 28801 GTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCTT 28742 Query 25505 AGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCAT 25564 ||| ||||| | ||||| ||| |||||||||||| |||||||| || || | ||||| Sbjct 28741 AGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCAT 28682 Query 25565 GTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 25599 || | | || | |||||| ||||| || || ||| Sbjct 28681 GT-CGGCAGAGCGCTGGTACAGCTGGCATGACAGC 28648 >seq1326 Length=97166 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 25445 GTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTA 25504 ||| |||||||| || || || ||||| |||||||| | | || || || || | Sbjct 45038 GTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCTT 44979 Query 25505 AGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCAT 25564 ||| ||||| | ||||| ||| |||||||||||| |||||||| || || | ||||| Sbjct 44978 AGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCAT 44919 Query 25565 GTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 25599 || | | || | |||||| ||||| || || ||| Sbjct 44918 GT-CGGCAGAGCGCTGGTACAGCTGGCATGACAGC 44885 >seq1263 Length=68635 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 25445 GTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTA 25504 ||| |||||||| || || || ||||| |||||||| | | || || || || | Sbjct 46854 GTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCTT 46913 Query 25505 AGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCAT 25564 ||| ||||| | ||||| ||| |||||||||||| |||||||| || || | ||||| Sbjct 46914 AGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCAT 46973 Query 25565 GTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 25599 || | | || | |||||| ||||| || || ||| Sbjct 46974 GT-CGGCAGAGCGCTGGTACAGCTGGCATGACAGC 47007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339933752772702