Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2059 188 2e-42 seq1675 188 2e-42 >seq2059 Length=104123 Score = 188 bits (208), Expect = 2e-42 Identities = 322/463 (70%), Gaps = 12/463 (3%) Strand=Plus/Minus Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 ||||| || |||||||| || ||||| || || || || || || || |||||| Sbjct 73218 AGGTATGTTGACCAGGGCGGCAACAAGCGGCCCGGTGCATTCGCCATCTACCTGGAGCCT 73159 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || | ||| | || || || || || || || || ||||| || ||||| || Sbjct 73158 TGGCACCCGGATGTGTTCGAATTCCTCGACCTGCGCAAGAACACCGGCAAAGATGAGAAT 73099 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || || || |||||||| || || ||||| | |||| || ||| ||||||| ||| Sbjct 73098 CGAGCCCGCGACCTGTTCTACGCGCTCTGGGTGCCGGACCTCTTCATGCAGCGCGTCGAG 73039 Query 363985 GCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 | || || ||| | ||| | ||| ||||| ||||| || || ||||||| Sbjct 73038 TCCAACGGCCAG---TGGACCCTCATGGACCCGCACGAGTGTCCCGGCCTGTCCGATGCC 72982 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 ||||| | || | || || ||||| || ||||||| || |||| || ||| Sbjct 72981 TGGGGCGCGGATTTCGTCAAGCTGTACGAGTCATACGAATCGGCCGGCAAGGGGCGCAAG 72922 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 ||| | | ||| ||| |||| |||| || || || || | ||||| ||||| || || Sbjct 72921 ACAGTGCGCGCCCAGGAGCTCTGGTACGCAATTATCGAGGCCCAGATCGAGACTGGCACG 72862 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 ||||| ||| ||||||| || ||||||||| |||| |||||||||||||||||| || Sbjct 72861 CCCTACATGCTGTACAAGGACTCGTGCAACTCCAAGAGCAACCAGCAGCACCTTGGCACC 72802 Query 364222 ATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACA 364261 | ||| || || ||||| || || |||||| | ||||||| Sbjct 72801 A-TCA--AGTGCTCAAACCTGTGCACGGAGATTGTCGAATACA 72762 Score = 84.2 bits (92), Expect = 6e-11 Identities = 180/265 (68%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||||| || || ||| ||||| || || | || || ||| || || Sbjct 73816 TTCACCCACGCCAGTCCTACTCTGTTTAATGCCGGCACACCGAAGCCGCAGCTGAGCTCC 73757 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | ||||||||||| ||| ||||| |||| ||||| || ||| | Sbjct 73756 TGCTTCCTGCTCACCATGAAGGACGACAGCATTGAGGGCATCTACGACACTCTGAAGCAG 73697 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGC 363725 || || || || |||||| ||| |||||| | || | || ||| |||| || Sbjct 73696 TGCGCCCTCATCTCCAAGTCTGCTGGCGGAGTCGGCCTCAACATTCACTGCATTCGCAGC 73637 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGG-GCTGGTTCCCATGCTTC 363784 || | | |||||| |||||| || ||||||||| | || ||| |||| Sbjct 73636 ACCG-GCTCCTACATTGCCGGCACCAATGGCACCTCGAATGGCATTCGTGCCCTTGCTGA 73578 Query 363785 GTGTGTTTGACAATACTGCGAGGTA 363809 | |||||| ||||||| || ||||| Sbjct 73577 GGGTGTTTAACAATACGGCCAGGTA 73553 >seq1675 Length=86464 Score = 188 bits (208), Expect = 2e-42 Identities = 322/463 (70%), Gaps = 12/463 (3%) Strand=Plus/Minus Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 ||||| || |||||||| || ||||| || || || || || || || |||||| Sbjct 15761 AGGTATGTTGACCAGGGCGGCAACAAGCGGCCCGGTGCATTCGCCATCTACCTGGAGCCT 15702 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || | ||| | || || || || || || || || ||||| || ||||| || Sbjct 15701 TGGCACCCGGATGTGTTCGAATTCCTCGACCTGCGCAAGAACACCGGCAAAGATGAGAAT 15642 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || || || |||||||| || || ||||| | |||| || ||| ||||||| ||| Sbjct 15641 CGAGCCCGCGACCTGTTCTACGCGCTCTGGGTGCCGGACCTCTTCATGCAGCGCGTCGAG 15582 Query 363985 GCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 | || || ||| | ||| | ||| ||||| ||||| || || ||||||| Sbjct 15581 TCCAACGGCCAG---TGGACCCTCATGGACCCGCACGAGTGTCCCGGCCTGTCCGATGCC 15525 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 ||||| | || | || || ||||| || ||||||| || |||| || ||| Sbjct 15524 TGGGGCGCGGATTTCGTCAAGCTGTACGAGTCATACGAATCGGCCGGCAAGGGGCGCAAG 15465 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 ||| | | ||| ||| |||| |||| || || || || | ||||| ||||| || || Sbjct 15464 ACAGTGCGCGCCCAGGAGCTCTGGTACGCAATTATCGAGGCCCAGATCGAGACTGGCACG 15405 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 ||||| ||| ||||||| || ||||||||| |||| |||||||||||||||||| || Sbjct 15404 CCCTACATGCTGTACAAGGACTCGTGCAACTCCAAGAGCAACCAGCAGCACCTTGGCACC 15345 Query 364222 ATTCAGCAGAGC---AACCTATGTACCGAGATTATTGAATACA 364261 | ||| || || ||||| || || |||||| | ||||||| Sbjct 15344 A-TCA--AGTGCTCAAACCTGTGCACGGAGATTGTCGAATACA 15305 Score = 91.5 bits (100), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||||| || || ||| ||||| || || | || || ||| || || Sbjct 16632 TTCACCCACGCCAGTCCTACTCTGTTTAATGCCGGCACACCGAAGCCGCAGCTGAGCTCC 16573 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | ||||||||||| ||| ||||| |||| ||||| || ||| | Sbjct 16572 TGCTTCCTGCTCACCATGAAGGACGACAGCATTGAGGGCATCTACGACACTCTGAAGCAG 16513 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGC 363725 || || || || |||||| ||| |||||| | || | || ||| |||| || Sbjct 16512 TGCGCCCTCATCTCCAAGTCTGCTGGCGGAGTCGGCCTCAACATTCACTGCATTCGCAGC 16453 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | |||||| |||||| || ||||||||| | || ||| |||| | Sbjct 16452 ACCG-GCTCCTACATTGCCGGCACCAATGGCACCTCGAATGGCATTGTGCCCTTGCTGAG 16394 Query 363786 TGTGTTTGACAATACTGCGAGGTA 363809 |||||| ||||||| || ||||| Sbjct 16393 GGTGTTTAACAATACGGCCAGGTA 16370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302532432654068