Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2636 96.9 3e-15 seq1807 96.9 3e-15 seq767 96.9 3e-15 seq20824 89.7 4e-13 >seq2636 Length=142077 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 112401 ACGTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTC 112460 |||||||| || || |||||||| | ||| || |||| || ||||| ||| | || Sbjct 25628 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 25687 Query 112461 GTGGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGC 112520 || || ||||| |||| |||||| ||| ||||| || |||||||||| |||||| Sbjct 25688 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 25747 Query 112521 ACGTGAAAACCGTGCAACCCGCGCGGCA 112548 |||||||| |||||| ||| ||| || Sbjct 25748 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 25775 >seq1807 Length=57471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 112401 ACGTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTC 112460 |||||||| || || |||||||| | ||| || |||| || ||||| ||| | || Sbjct 43940 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 43999 Query 112461 GTGGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGC 112520 || || ||||| |||| |||||| ||| ||||| || |||||||||| |||||| Sbjct 44000 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 44059 Query 112521 ACGTGAAAACCGTGCAACCCGCGCGGCA 112548 |||||||| |||||| ||| ||| || Sbjct 44060 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 44087 >seq767 Length=230551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 112401 ACGTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTC 112460 |||||||| || || |||||||| | ||| || |||| || ||||| ||| | || Sbjct 117434 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 117493 Query 112461 GTGGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGC 112520 || || ||||| |||| |||||| ||| ||||| || |||||||||| |||||| Sbjct 117494 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 117553 Query 112521 ACGTGAAAACCGTGCAACCCGCGCGGCA 112548 |||||||| |||||| ||| ||| || Sbjct 117554 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 117581 >seq20824 Length=12435 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 112401 ACGTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTC 112460 |||||||| || || |||||||| | ||| || |||| || ||||| |||| | || Sbjct 7223 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGGGGTCC-GTTTG 7281 Query 112461 GTGGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGC 112520 || || ||||| |||| ||||| ||| ||||| || |||||||||| |||||| Sbjct 7282 CACGGATTGAAATGAGCGCCA-CCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 7340 Query 112521 ACGTGAAAACCGTGCAACCCGCGCGGCA 112548 |||||||| |||||| ||| ||| || Sbjct 7341 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 7368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425089087884880