Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq46426 91.5 1e-13 seq2674 91.5 1e-13 seq857 91.5 1e-13 seq45287 87.8 2e-12 >seq46426 Length=159343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 51177 CGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTC 51236 |||||| |||| ||| |||||||||||||||||||||| ||| |||||||| ||| |||| Sbjct 28097 CGTCCACTCCAGAATCTTCTTGGCCCAGTACATGCGCAAGTAGCCGTGCATTTTGGCCTC 28156 Query 51237 GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGT 51281 || | | |||| || || | |||||||| ||||||||| Sbjct 28157 GCGAACCATCTGCAGCTGGGCAGCGTTCCACAGCCGGTCGTGAGT 28201 >seq2674 Length=67143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 51177 CGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTC 51236 |||||| |||| ||| |||||||||||||||||||||| ||| |||||||| ||| |||| Sbjct 63809 CGTCCACTCCAGAATCTTCTTGGCCCAGTACATGCGCAAGTAGCCGTGCATTTTGGCCTC 63750 Query 51237 GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGGCAACTTGCCAG 51296 || | | |||| || || | |||||||| ||||||||| ||| |||| Sbjct 63749 GCGAACCATCTGCAGCTGGGCGGCGTTCCACAGCCGGTCGTGAGTCCGGCCCTCCTCCAG 63690 Query 51297 CT-CTGTCAAATTGTAAATGTATGAGCGATGATCGTATTT---GTGTTGCTCGATCGTTT 51352 || ||| | |||| | ||| | || || ||| | ||| ||| | |||| Sbjct 63689 CTCCTGAC-GGGTGTACAGGTA-GGGCCGTG--CGTCCCTGGAGTGGCGCTGCAGAGTTT 63634 Query 51353 CTTGAGCCCATTGTGGTGCGCCTTCAACACAGTCGTAGCGGTCGTTGTAGAAACAAAAAT 51412 | | ||||| | |||||||||| | |||||| | |||| | ||| |||| Sbjct 63633 CGCGCGCCCAATCATAGGCGCCTTCAAGTGAATCGTAGTTGGAATTGTGCAGACAGAAAT 63574 Query 51413 TGTCGGCCAGTTCGCGGCGTACCACGACTTCGTCGATGTATCTGTCCAC 51461 |||| || | |||||| || || ||| || |||||| | |||||| Sbjct 63573 TGTCAGCTAATTCGCGTCGGACAACGGACTCTTCGATGAAGGCGTCCAC 63525 >seq857 Length=202914 Score = 91.5 bits (100), Expect = 1e-13 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 51177 CGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTC 51236 |||||| |||| ||| |||||||||||||||||||||| ||| |||||||| ||| |||| Sbjct 74343 CGTCCACTCCAGAATCTTCTTGGCCCAGTACATGCGCAAGTAGCCGTGCATTTTGGCCTC 74402 Query 51237 GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGGCAACTTGCCAG 51296 || | | |||| || || | |||||||| ||||||||| ||| |||| Sbjct 74403 GCGAACCATCTGCAGCTGGGCGGCGTTCCACAGCCGGTCGTGAGTCCGGCCCTCCTCCAG 74462 Query 51297 CT-CTGTCAAATTGTAAATGTATGAGCGATGATCGTATTT---GTGTTGCTCGATCGTTT 51352 || ||| | |||| | ||| | || || ||| | ||| ||| | |||| Sbjct 74463 CTCCTGAC-GGGTGTACAGGTA-GGGCCGTG--CGTCCCTGGAGTGGCGCTGCAGAGTTT 74518 Query 51353 CTTGAGCCCATTGTGGTGCGCCTTCAACACAGTCGTAGCGGTCGTTGTAGAAACAAAAAT 51412 | | ||||| | |||||||||| | |||||| | |||| | ||| |||| Sbjct 74519 CGCGCGCCCAATCATAGGCGCCTTCAAGTGAATCGTAGTTGGAATTGTGCAGACAGAAAT 74578 Query 51413 TGTCGGCCAGTTCGCGGCGTACCACGACTTCGTCGATGTATCTGTCCAC 51461 |||| || | |||||| || || ||| || |||||| | |||||| Sbjct 74579 TGTCAGCTAATTCGCGTCGGACAACGGACTCTTCGATGAAGGCGTCCAC 74627 >seq45287 Length=50511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||||||||| ||||| | || || || |||||||| | || || ||| | Sbjct 2450 ACTATGCAAATATTTGTCAAGACCCTAACAGGCAAGACCATCACACTTGAGGTTGAGCCT 2391 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||| ||||| || || |||| ||||||| ||||| || || || ||||| Sbjct 2390 AGCGACACCATCGA--CAATGTGAAAGC-AAAAATCCAGGACAAGGAGGGCATCCCACCC 2334 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || || |||||||| || | || |||| | ||| | || Sbjct 2333 GATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACTCTATCTGAC 2274 Query 25173 TACAATATTCAAAAAGAATCCAC 25195 |||||||| || || || ||||| Sbjct 2273 TACAATATCCAGAAGGAGTCCAC 2251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433068303008810