Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq45377 87.8 2e-12 seq1326 87.8 2e-12 seq1263 87.8 2e-12 >seq45377 Length=76098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 20190 TGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACAT 20249 |||| | ||| ||||| || | ||||| | |||||||| | | || || || || | Sbjct 28802 TGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCT 28743 Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 ||||| ||||| || | || | |||||||| || ||||| || || |||| ||||| Sbjct 28742 TAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCA 28683 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTA--CA-TAAAATT 20366 |||| | || | ||| |||||||| || || ||| || || ||| || || | | Sbjct 28682 TGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGCAGTACAGCT 28623 Query 20367 GACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 | | | ||||||||||||| || |||||| Sbjct 28622 GGAACAGGCAGTGACAGGGCGGCAGGGCCATC 28591 >seq1326 Length=97166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 20190 TGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACAT 20249 |||| | ||| ||||| || | ||||| | |||||||| | | || || || || | Sbjct 45039 TGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCT 44980 Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 ||||| ||||| || | || | |||||||| || ||||| || || |||| ||||| Sbjct 44979 TAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCA 44920 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTA--CA-TAAAATT 20366 |||| | || | ||| |||||||| || || ||| || || ||| || || | | Sbjct 44919 TGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGCAGTACAGCT 44860 Query 20367 GACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 | | | ||||||||||||| || |||||| Sbjct 44859 GGAACAGGCAGTGACAGGGCGGCAGGGCCATC 44828 >seq1263 Length=68635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 20190 TGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACAT 20249 |||| | ||| ||||| || | ||||| | |||||||| | | || || || || | Sbjct 46853 TGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCT 46912 Query 20250 GAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCA 20309 ||||| ||||| || | || | |||||||| || ||||| || || |||| ||||| Sbjct 46913 TAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCA 46972 Query 20310 TGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTA--CA-TAAAATT 20366 |||| | || | ||| |||||||| || || ||| || || ||| || || | | Sbjct 46973 TGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGCAGTACAGCT 47032 Query 20367 GACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 | | | ||||||||||||| || |||||| Sbjct 47033 GGAACAGGCAGTGACAGGGCGGCAGGGCCATC 47064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441101499174160