Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4660 95.1 3e-14 seq360 95.1 3e-14 seq4460 86.0 1e-11 >seq4660 Length=41694 Score = 95.1 bits (104), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||| || || | || ||| |||| || | |||| ||| | || || || || || || Sbjct 10895 CCAGGCTTCAACCTCGGAGATGTACGGCGAGGTGCGCGAAGTGCCGCAAACTGAGAAGAC 10836 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 || |||||||| || || ||||| || || ||| ||||||||||||||||||| | Sbjct 10835 GCCATTTTATCCGCGTTCGCCCTACGGCGTGGCGAAGCTGTACGCTTATTGGATCTGCAT 10776 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGAT-TTGTTTCAATCACGAGA 68583 || || | ||| | || |||| | | ||||| ||| |||||| |||||||||| Sbjct 10775 CAACTATAGGGAGGCCTACGGCATGCACGCCTGCAATGGGATCTTGTTT-AATCACGAGA 10717 Query 68584 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 68642 |||| | | ||| | | || |||||| | || ||||| | | ||| || || ||| Sbjct 10716 GTCCGAGACGGGGCGAGAATTTTGTGACTAGAAAGATCACCAGAGCGGTGGCTAAAATT 10658 >seq360 Length=289103 Score = 95.1 bits (104), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||| || || | || ||| |||| || | |||| ||| | || || || || || || Sbjct 84472 CCAGGCTTCAACCTCGGAGATGTACGGCGAGGTGCGCGAAGTGCCGCAAACTGAGAAGAC 84413 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 || |||||||| || || ||||| || || ||| ||||||||||||||||||| | Sbjct 84412 GCCATTTTATCCGCGTTCGCCCTACGGCGTGGCGAAGCTGTACGCTTATTGGATCTGCAT 84353 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGAT-TTGTTTCAATCACGAGA 68583 || || | ||| | || |||| | | ||||| ||| |||||| |||||||||| Sbjct 84352 CAACTATAGGGAGGCCTACGGCATGCACGCCTGCAATGGGATCTTGTTT-AATCACGAGA 84294 Query 68584 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 68642 |||| | | ||| | | || |||||| | || ||||| | | ||| || || ||| Sbjct 84293 GTCCGAGACGGGGCGAGAATTTTGTGACTAGAAAGATCACCAGAGCGGTGGCTAAAATT 84235 >seq4460 Length=111986 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||| || || | || ||| |||| || | |||| ||| | || || || || || || Sbjct 105935 CCAGGCTTCAACCTCGGAGATGTACGGCGAGGTGCGCGAAGTGCCGCAAACTGAGAAAAC 105994 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 || |||||||| || || ||||| || || ||| ||||||||||||||||||| | Sbjct 105995 GCCATTTTATCCGCGTTCGCCCTACGGCGTGGCGAAGCTGTACGCTTATTGGATCTGCAT 106054 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGAT-TTGTTTCAATCACGAGA 68583 || || | ||| | || |||| | | || || ||| |||||| |||||||||| Sbjct 106055 CAACTATAGGGAGGCCTACGGCATGCACGCCTGTAATGGGATCTTGTTT-AATCACGAGA 106113 Query 68584 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATT 68642 |||| | | ||| | | || || ||| | || ||||| | | ||| || || ||| Sbjct 106114 GTCCGAGACGGGGCGAGAATTTTGTAACTAGAAAGATCACCAGAGCGGTGGCTAAAATT 106172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102185139416900