Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2059 188 7e-43 seq1675 188 7e-43 >seq2059 Length=104123 Score = 188 bits (208), Expect = 7e-43 Identities = 316/457 (69%), Gaps = 0/457 (0%) Strand=Plus/Minus Query 94174 GGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTG 94233 ||| | ||||| |||| || ||||| |||||| |||| ||| | ||| |||||||| Sbjct 73185 GGTGCATTCGCCATCTACCTGGAGCCTTGGCACCCGGATGTGTTCGAATTCCTCGACCTG 73126 Query 94234 CGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTG 94293 || |||||| |||||| ||| | | | ||| | ||||| |||||||| ||||||||| Sbjct 73125 CGCAAGAACACCGGCAAAGATGAGAATCGAGCCCGCGACCTGTTCTACGCGCTCTGGGTG 73066 Query 94294 CCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAAT 94353 || ||||| || ||| | ||||||||| ||| | |||| || | || | Sbjct 73065 CCGGACCTCTTCATGCAGCGCGTCGAGTCCAACGGCCAGTGGACCCTCATGGACCCGCAC 73006 Query 94354 GAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTAC 94413 || |||||||| |||||||| | || || || ||| | | |||| | ||| Sbjct 73005 GAGTGTCCCGGCCTGTCCGATGCCTGGGGCGCGGATTTCGTCAAGCTGTACGAGTCATAC 72946 Query 94414 GAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTG 94473 |||||| ||||||| | ||| || || | |||| ||| | || | Sbjct 72945 GAATCGGCCGGCAAGGGGCGCAAGACAGTGCGCGCCCAGGAGCTCTGGTACGCAATTATC 72886 Query 94474 GACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAG 94533 || | ||| | ||||| || ||||||||||| ||| ||||||||| |||| ||||| Sbjct 72885 GAGGCCCAGATCGAGACTGGCACGCCCTACATGCTGTACAAGGACTCGTGCAACTCCAAG 72826 Query 94534 TCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAG 94593 ||||||||||||||| || |||||| |||| || |||||||| ||||||||||| Sbjct 72825 AGCAACCAGCAGCACCTTGGCACCATCAAGTGCTCAAACCTGTGCACGGAGATTGTCGAA 72766 Query 94594 TATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGG 94630 || | || || ||| | || ||||| || |||| Sbjct 72765 TACAGCAGCCCAGATGAGGTGGCAGTGTGCAATCTGG 72729 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||||||| | | ||||||| ||||||||||| || |||||||| ||| ||| ||| Sbjct 71890 AACCTGAACCGCATCATCGACATCAACTTCTACCCGGTGCCGGAGGCCGAGCGCTCCAAC 71831 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGC 94835 || || |||||||||||||||||||| |||||| | |||||||| Sbjct 71830 ATGCGCCACCGGCCCATCGGCATCGGCGTGCAGGGTCTGGCGGACGC 71784 >seq1675 Length=86464 Score = 188 bits (208), Expect = 7e-43 Identities = 316/457 (69%), Gaps = 0/457 (0%) Strand=Plus/Minus Query 94174 GGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTG 94233 ||| | ||||| |||| || ||||| |||||| |||| ||| | ||| |||||||| Sbjct 15728 GGTGCATTCGCCATCTACCTGGAGCCTTGGCACCCGGATGTGTTCGAATTCCTCGACCTG 15669 Query 94234 CGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTG 94293 || |||||| |||||| ||| | | | ||| | ||||| |||||||| ||||||||| Sbjct 15668 CGCAAGAACACCGGCAAAGATGAGAATCGAGCCCGCGACCTGTTCTACGCGCTCTGGGTG 15609 Query 94294 CCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAAT 94353 || ||||| || ||| | ||||||||| ||| | |||| || | || | Sbjct 15608 CCGGACCTCTTCATGCAGCGCGTCGAGTCCAACGGCCAGTGGACCCTCATGGACCCGCAC 15549 Query 94354 GAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTAC 94413 || |||||||| |||||||| | || || || ||| | | |||| | ||| Sbjct 15548 GAGTGTCCCGGCCTGTCCGATGCCTGGGGCGCGGATTTCGTCAAGCTGTACGAGTCATAC 15489 Query 94414 GAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTG 94473 |||||| ||||||| | ||| || || | |||| ||| | || | Sbjct 15488 GAATCGGCCGGCAAGGGGCGCAAGACAGTGCGCGCCCAGGAGCTCTGGTACGCAATTATC 15429 Query 94474 GACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAG 94533 || | ||| | ||||| || ||||||||||| ||| ||||||||| |||| ||||| Sbjct 15428 GAGGCCCAGATCGAGACTGGCACGCCCTACATGCTGTACAAGGACTCGTGCAACTCCAAG 15369 Query 94534 TCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAG 94593 ||||||||||||||| || |||||| |||| || |||||||| ||||||||||| Sbjct 15368 AGCAACCAGCAGCACCTTGGCACCATCAAGTGCTCAAACCTGTGCACGGAGATTGTCGAA 15309 Query 94594 TATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGG 94630 || | || || ||| | || ||||| || |||| Sbjct 15308 TACAGCAGCCCAGATGAGGTGGCAGTGTGCAATCTGG 15272 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||||||| | | ||||||| ||||||||||| || |||||||| ||| ||| ||| Sbjct 14526 AACCTGAACCGCATCATCGACATCAACTTCTACCCGGTGCCGGAGGCCGAGCGCTCCAAC 14467 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGC 94835 || || |||||||||||||||||||| |||||| | |||||||| Sbjct 14466 ATGCGCCACCGGCCCATCGGCATCGGCGTGCAGGGTCTGGCGGACGC 14420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494419106017040