Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq46215 89.7 6e-13 seq695 89.7 6e-13 seq661 89.7 6e-13 seq527 89.7 6e-13 seq7454 86.0 8e-12 seq11651 84.2 3e-11 seq11958 82.4 9e-11 >seq46215 Length=28708 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 ||||||||||||||| |||||||| || || ||||| ||| || || |||| | Sbjct 11597 GCATCTTTGCCACCCTGGAGACGCGAACCGAACTGACCGTTCGGCATCAGCAGGTTGAGA 11656 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||||| | | |||| | ||| || |||| || || || | || ||| |||| Sbjct 11657 TTGTTGGAGCCGACAAAGTCTTGCGCTAAATTGATGATGGTGCCCACTAGAGAGGCTTCG 11716 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCT 176096 ||||| || |||||||| | |||| ||| | | || | || ||||||| Sbjct 11717 CCGTGGTGATAGGCCGAGATCTCCGACACTGAGCCAGCTAGTTGAGCCACCT 11768 >seq695 Length=29205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 ||||||||||||||| |||||||| || || ||||| ||| || || |||| | Sbjct 804 GCATCTTTGCCACCCTGGAGACGCGAGCCGAACTGACCGTTCGGCATCAGCAGGTTGAGA 863 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||||| | | |||| | ||| || |||| || || || | || ||| |||| Sbjct 864 TTGTTGGAGCCGACAAAGTCCTGCGCTAAATTGATGATGGTGCCCACTAGAGAGGCTTCG 923 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCT 176096 ||||| || |||||||| | |||| ||| | | || | || ||||||| Sbjct 924 CCGTGGTGATAGGCCGAGATCTCCGACACTGAGCCAGCTAGTTGAGCCACCT 975 >seq661 Length=260286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 ||||||||||||||| |||||||| || || ||||| ||| || || |||| | Sbjct 11664 GCATCTTTGCCACCCTGGAGACGCGAGCCGAACTGACCGTTCGGCATCAGCAGGTTGAGA 11723 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||||| | | |||| | ||| || |||| || || || | || ||| |||| Sbjct 11724 TTGTTGGAGCCGACAAAGTCCTGCGCTAAATTGATGATGGTGCCCACTAGAGAGGCTTCG 11783 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCT 176096 ||||| || |||||||| | |||| ||| | | || | || ||||||| Sbjct 11784 CCGTGGTGATAGGCCGAGATCTCCGACACTGAGCCAGCTAGTTGAGCCACCT 11835 >seq527 Length=256532 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 ||||||||||||||| |||||||| || || ||||| ||| || || |||| | Sbjct 15433 GCATCTTTGCCACCCTGGAGACGCGAACCGAACTGACCGTTCGGCATCAGCAGGTTGAGA 15492 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||||| | | |||| | ||| || |||| || || || | || ||| |||| Sbjct 15493 TTGTTGGAGCCGACAAAGTCTTGCGCTAAATTGATGATGGTGCCCACTAGAGAGGCTTCG 15552 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCT 176096 ||||| || |||||||| | |||| ||| | | || | || ||||||| Sbjct 15553 CCGTGGTGATAGGCCGAGATCTCCGACACTGAGCCAGCTAGTTGAGCCACCT 15604 >seq7454 Length=56988 Score = 86.0 bits (94), Expect = 8e-12 Identities = 296/453 (65%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||||||||||| |||||||| ||||| || || |||||||| |||||||| Sbjct 38506 GTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCAT 38447 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 ||| || || || |||| ||||| | ||| |||| | | || |||| || Sbjct 38446 AAAGTCGAAGGGATTCTCAGAGTTGAAGGCCTTG-GGGCAGTTC-AGCTCGGTGAGCAGT 38389 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 | || | ||| |||| ||||| |||| | ||||||| ||||||||| | Sbjct 38388 CTGTCAGCCACGAACTCGATGTAGCGGCACATGGAGGCGCAGTTCATGCCGATGAGG-GA 38330 Query 127409 CA-TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || || | || ||| | ||| | || ||| ||| ||| || || || | ||| | Sbjct 38329 CACCGGCAAAGCCTCCGTCAGGAAGCTCTGCTCGATGCGCACCGCGTCACGGATGATCTC 38270 Query 127468 GTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACA-GCAAACT 127526 | || | | || | | | || || || | | | || ||||| | Sbjct 38269 CTCGAT-GCGCTGACTGCTTGGCGGCCGCTGAAGGTGGCGGAACATCAGGCAGGCAAAGT 38211 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | |||||| || ||||| || |||||| || || |||| ||| |||||||||| Sbjct 38210 CGGTGTGGAGGCCTTCGTCGCGACTGATGAGCTCGTTGCTGAAGGTCAGGCCTGGCATGA 38151 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||||| |||||| | || || ||| ||||||||| ||||| | Sbjct 38150 GGCCGCGCTTCTTCAGCCAGAAGACGGCGGCGAAGCTGCCGCTGAAGAAGATGCCCTCAA 38091 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || ||||| || | | |||||| | |||| Sbjct 38090 CAGCTGCGAAGGCCACCACGCGCTCGCCGAAGG 38058 >seq11651 Length=16128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||||||||||| |||||||| ||||| || || |||||||| |||||||| Sbjct 4372 GTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCAT 4431 Query 127291 AAAATCAAATGGGTTCTTTGAGTT 127314 ||| || || || |||| ||||| Sbjct 4432 AAAGTCGAAGGGATTCTCAGAGTT 4455 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||||||||||| |||||||| ||||| || || |||||||| |||||||| Sbjct 11743 GTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCAT 11684 Query 127291 AAAATCAAATGGGTTCTTTGAGTT 127314 ||| || || || |||| ||||| Sbjct 11683 AAAGTCGAAGGGATTCTCAGAGTT 11660 >seq11958 Length=54492 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||| || ||||| ||| |||||| || || |||| ||| ||| Sbjct 32885 GCAAAGTCAGTGTGGAGGCCTTCGTCGCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCT 32826 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||||| |||||| | || || ||| ||||||||| Sbjct 32825 GGCATGAGGCCGCGCTTCTTCAGCCAGAAGACGGCGGCGAAGCTGCCGCTGAAGAAGATG 32766 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| ||| ||||| || | | |||||| | |||| Sbjct 32765 CCCTCAACAGCTGCGAAGGCCACCACGCGCTCGCCGAAGG 32726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613130092461840