Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2059 152 8e-32 seq1675 152 8e-32 seq12926 134 2e-26 seq12609 134 2e-26 seq11651 132 8e-26 seq7454 132 8e-26 >seq2059 Length=104123 Score = 152 bits (168), Expect = 8e-32 Identities = 181/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 203828 CGAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGA 203887 |||||| | | ||||||||| |||||||| || | | |||| |||||| | | ||| Sbjct 70866 CGAACCCTGGCCTTGTCCACGGTGAACTGGATTGGCTGGGCGGCCGGCCTGGTGCGCAGG 70925 Query 203888 TAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTG 203947 ||||||||||||||||| ||||| | |||| || | | ||||||| | | ||| Sbjct 70926 TAGTACATGCCGGTCTTCAGGCCGCTGCGCCAGGCGAAGAAGTGCATGCTGGTGATCTTG 70985 Query 203948 CTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC 204007 | |||||| | ||| ||||| | |||||| |||||| ||||| ||| ||||||| Sbjct 70986 GCAAAGTTGGGCTGGGCGATGTGCAGGTTCAGGCTCTGGCTCTGGTCAATG-TAGGCGCC 71044 Query 204008 -CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACAC 204066 || || |||||||| | || ||| |||||||| |||||||||||||||||| ||| Sbjct 71045 GCGGTCGGCGGCCATTTCCATGATGCGCTTCTGCGGGATCTCCCACACCGTCTTGTACAG 71104 Query 204067 GTC 204069 ||| Sbjct 71105 GTC 71107 >seq1675 Length=86464 Score = 152 bits (168), Expect = 8e-32 Identities = 181/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 203828 CGAACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGA 203887 |||||| | | ||||||||| |||||||| || | | |||| |||||| | | ||| Sbjct 13502 CGAACCCTGGCCTTGTCCACGGTGAACTGGATTGGCTGGGCGGCCGGCCTGGTGCGCAGG 13561 Query 203888 TAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTG 203947 ||||||||||||||||| ||||| | |||| || | | ||||||| | | ||| Sbjct 13562 TAGTACATGCCGGTCTTCAGGCCGCTGCGCCAGGCGAAGAAGTGCATGCTGGTGATCTTG 13621 Query 203948 CTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC 204007 | |||||| | ||| ||||| | |||||| |||||| ||||| ||| ||||||| Sbjct 13622 GCAAAGTTGGGCTGGGCGATGTGCAGGTTCAGGCTCTGGCTCTGGTCAATG-TAGGCGCC 13680 Query 204008 -CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACAC 204066 || || |||||||| | || ||| |||||||| |||||||||||||||||| ||| Sbjct 13681 GCGGTCGGCGGCCATTTCCATGATGCGCTTCTGCGGGATCTCCCACACCGTCTTGTACAG 13740 Query 204067 GTC 204069 ||| Sbjct 13741 GTC 13743 >seq12926 Length=13411 Score = 134 bits (148), Expect = 2e-26 Identities = 480/737 (65%), Gaps = 15/737 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGGT 159707 |||||| || ||||||||||||||||||| || | || | |||||||| |||| || | Sbjct 7623 CTTCTCAAAGAAGTTGGTCTTGCCCTCCA-GGCTGATGTTCTCCATGAAGTCGAAGGGAT 7681 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || || ||| || | || | | |||| |||||| ||||| || | Sbjct 7682 TCTCAGAGTTGAAGGCCTTGGGGCAGTTCAGCTCGGTGAGCAGCCTGTCAGCCACGAACT 7741 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||||| ||||| | ||||| || || | || || || | || |||| Sbjct 7742 CGATGTAGCGGCACATGGAGGCGCAGTTCATGCCGATGAGGGACACCGGCAAAGCCTCCG 7801 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| || || ||| || ||||| || | |||| | || || | | Sbjct 7802 TCAGGAAGCTCTGCTCGATGCGCACCGCGTCACGGATGATCTCCTCGATGCGCTGACTGC 7861 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||| | | || |||| |||| ||||| |||||||| ||| || || | Sbjct 7862 TTGGCGGCCGCTGAAGGTGGCGG---AACATCAGGCAGGCAAAGTCAGTGTGGAGGCCTT 7918 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||| ||||||| | | | ||||| ||||||| || ||| || | Sbjct 7919 CGTCGCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCTGGCATGAGGCCGCGCTTCTTCA 7978 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 |||| || | ||| || || ||||| || ||||| ||||| ||||| || || |||| Sbjct 7979 GCCAGAAGACGGCGGCGAAGCTGCCGCTGAAGAAGATGCCCTCAACGGCTGCGAAGGCCA 8038 Query 160068 CGAGCCTCTCACCAAAAGAGGC--GTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 | | | ||| || || | ||| | | ||| | | |||| | ||||| || || Sbjct 8039 CCACGCGCTCGCCGAAGGTGGCCCGCTTGTGGGA--GATCCAGTTGAGCGCCCAGTCTGC 8096 Query 160126 CTTCTTTGCGATGCA-CGGCATGCG-CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 ||||| ||| | ||||| ||| ||||| |||||| |||| ||| ||| | Sbjct 8097 CTTCTG-GCGCACCGGCGGCA-GCGTCTCGATGGCGTTGAACAGCAGGTCGCGCTGGGCC 8154 Query 160184 ACATCCTTGATCAGAGTAG-CAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 ||| | | || | |||||||| ||||||||| || | ||| | || || || Sbjct 8155 GGGTCCCGCA-CGTAGCTGTCAATCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCAAT 8213 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||||| ||| |||||| | | |||||| | |||||||||||| | ||||| Sbjct 8214 CATGATCTGGAAGCCGTAGAAGCACCTGGCCTCCGGGATCTGCACCTCCTGGGCGAACCG 8273 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | |||| || | || || | ||||| | ||| |||||||| |||| ||||| || Sbjct 8274 CTCCACCAGGTTCTCGTTCACGATGCCGTCAGAGGCAGCAAAGAAGGCCAGCACGTACGA 8333 Query 160363 GATGAAATGTCTCTCGT 160379 || || || ||||||| Sbjct 8334 GACAAAGTGCCTCTCGT 8350 >seq12609 Length=34370 Score = 134 bits (148), Expect = 2e-26 Identities = 480/737 (65%), Gaps = 15/737 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGGT 159707 |||||| || ||||||||||||||||||| || | || | |||||||| |||| || | Sbjct 28591 CTTCTCAAAGAAGTTGGTCTTGCCCTCCA-GGCTGATGTTCTCCATGAAGTCGAAGGGAT 28649 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || || ||| || | || | | |||| |||||| ||||| || | Sbjct 28650 TCTCAGAGTTGAAGGCCTTGGGGCAGTTCAGCTCGGTGAGCAGCCTGTCAGCCACGAACT 28709 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||||| ||||| | ||||| || || | || || || | || |||| Sbjct 28710 CGATGTAGCGGCACATGGAGGCGCAGTTCATGCCGATGAGGGACACCGGCAAAGCCTCCG 28769 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| || || ||| || ||||| || | |||| | || || | | Sbjct 28770 TCAGGAAGCTCTGCTCGATGCGCACCGCGTCACGGATGATCTCCTCGATGCGCTGACTGC 28829 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||| | | || |||| |||| ||||| |||||||| ||| || || | Sbjct 28830 TTGGCGGCCGCTGAAGGTGGCGG---AACATCAGGCAGGCAAAGTCAGTGTGGAGGCCTT 28886 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||| ||||||| | | | ||||| ||||||| || ||| || | Sbjct 28887 CGTCGCGGCTGATGAGCTCGTTGCTGAAGGTCAGGCCTGGCATGAGGCCGCGCTTCTTCA 28946 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 |||| || | ||| || || ||||| || ||||| ||||| ||||| || || |||| Sbjct 28947 GCCAGAAGACGGCGGCGAAGCTGCCGCTGAAGAAGATGCCCTCAACGGCTGCGAAGGCCA 29006 Query 160068 CGAGCCTCTCACCAAAAGAGGC--GTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 | | | ||| || || | ||| | | ||| | | |||| | ||||| || || Sbjct 29007 CCACGCGCTCGCCGAAGGTGGCCCGCTTGTGGGA--GATCCAGTTGAGCGCCCAGTCTGC 29064 Query 160126 CTTCTTTGCGATGCA-CGGCATGCG-CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 ||||| ||| | ||||| ||| ||||| |||||| |||| ||| ||| | Sbjct 29065 CTTCTG-GCGCACCGGCGGCA-GCGTCTCGATGGCGTTGAACAGCAGGTCGCGCTGGGCC 29122 Query 160184 ACATCCTTGATCAGAGTAG-CAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 ||| | | || | |||||||| ||||||||| || | ||| | || || || Sbjct 29123 GGGTCCCGCA-CGTAGCTGTCAATCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCAAT 29181 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||||| ||| |||||| | | |||||| | |||||||||||| | ||||| Sbjct 29182 CATGATCTGGAAGCCGTAGAAGCACCTGGCCTCCGGGATCTGCACCTCCTGGGCGAACCG 29241 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | |||| || | || || | ||||| | ||| |||||||| |||| ||||| || Sbjct 29242 CTCCACCAGGTTCTCGTTCACGATGCCGTCAGAGGCAGCAAAGAAGGCCAGCACGTACGA 29301 Query 160363 GATGAAATGTCTCTCGT 160379 || || || ||||||| Sbjct 29302 GACAAAGTGCCTCTCGT 29318 >seq11651 Length=16128 Score = 132 bits (146), Expect = 8e-26 Identities = 318/471 (68%), Gaps = 10/471 (2%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 |||| ||||| ||||||||| ||| || || ||||| ||| ||||| ||||||| Sbjct 4652 AACATCAGGCAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCGACTGATGAGCTCGTTGCTG 4711 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | ||||| ||||||| || ||| || ||||| || | ||| || || ||| Sbjct 4712 AAGGTCAGGCCTGGCATGAGGCCGCGCTTCTTCAGCCAGAAGACGGCGGCGAAGCTGCCG 4771 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC--GT 160091 || || ||||| ||||| || || || || ||||| | | ||| || || | ||| | Sbjct 4772 CTGAAGAAGATGCCCTCAACAGCTGCGAAGGCCACCACGCGCTCGCCGAAGGTGGCCCGC 4831 Query 160092 TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCA-CGGCATGCG- 160149 | ||| | | |||| | ||||| || ||||| || ||| | ||||| ||| Sbjct 4832 TTGTGGGA--GATCCAGTTGAGCGCCCAGTCTGCCTT-TTGGCGCACCGGCGGCA-GCGT 4887 Query 160150 CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAG-CAATCA 160208 ||||| |||||| |||| ||| ||| | ||| | | || | |||||| Sbjct 4888 CTCGATGGCGTTGAACAGCAGGTCGCGCTGGGCCGGGTCCCGCA-CGTAGCTGTCAATCA 4946 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || ||||||||| || | ||| | || || || ||||| ||| |||||| | Sbjct 4947 GCAGCGAGTACATCTCCGAGTGGATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACC 5006 Query 160269 TCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACC 160328 | |||||| | |||||||||||| | ||||| | | |||| || | || || | | Sbjct 5007 TGGCCTCCGGGATCTGCACCTCCTGGGCGAACCGCTCAACCAGGTTCTCGTTCACGATGC 5066 Query 160329 CGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 |||| | ||| || ||||| |||| ||||| |||| || || ||||||| Sbjct 5067 CGTCAGAGGCAGCGAAGAAGGCCAGCACGTACGAGACAAAGTGCCTCTCGT 5117 >seq7454 Length=56988 Score = 132 bits (146), Expect = 8e-26 Identities = 318/471 (68%), Gaps = 10/471 (2%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 |||| ||||| ||||||||| ||| || || ||||| ||| ||||| ||||||| Sbjct 38229 AACATCAGGCAGGCAAAGTCGGTGTGGAGGCCTTCGTCGCGACTGATGAGCTCGTTGCTG 38170 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | ||||| ||||||| || ||| || ||||| || | ||| || || ||| Sbjct 38169 AAGGTCAGGCCTGGCATGAGGCCGCGCTTCTTCAGCCAGAAGACGGCGGCGAAGCTGCCG 38110 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGC--GT 160091 || || ||||| ||||| || || || || ||||| | | ||| || || | ||| | Sbjct 38109 CTGAAGAAGATGCCCTCAACAGCTGCGAAGGCCACCACGCGCTCGCCGAAGGTGGCCCGC 38050 Query 160092 TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCA-CGGCATGCG- 160149 | ||| | | |||| | ||||| || ||||| || ||| | ||||| ||| Sbjct 38049 TTGTGGGA--GATCCAGTTGAGCGCCCAGTCTGCCTT-TTGGCGCACCGGCGGCA-GCGT 37994 Query 160150 CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAG-CAATCA 160208 ||||| |||||| |||| ||| ||| | ||| | | || | |||||| Sbjct 37993 CTCGATGGCGTTGAACAGCAGGTCGCGCTGGGCCGGGTCCCGCA-CGTAGCTGTCAATCA 37935 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || ||||||||| || | ||| | || || || ||||| ||| |||||| | Sbjct 37934 GCAGCGAGTACATCTCCGAGTGGATGTTCTCAATCATGATCTGGAAGCCGTAGAAGCACC 37875 Query 160269 TCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACC 160328 | |||||| | |||||||||||| | ||||| | | |||| || | || || | | Sbjct 37874 TGGCCTCCGGGATCTGCACCTCCTGGGCGAACCGCTCAACCAGGTTCTCGTTCACGATGC 37815 Query 160329 CGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 |||| | ||| || ||||| |||| ||||| |||| || || ||||||| Sbjct 37814 CGTCAGAGGCAGCGAAGAAGGCCAGCACGTACGAGACAAAGTGCCTCTCGT 37764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794666437977440