Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq45377 107 2e-18 seq1326 107 2e-18 seq1263 107 2e-18 >seq45377 Length=76098 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| |||||||| || || |||||||| |||||||| | | || || || || | Sbjct 28801 GTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCTT 28742 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 ||| ||||| | ||||| |||| |||||||||||| |||||||| || || || ||||| Sbjct 28741 AGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCAT 28682 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 29976 ||| | || | |||||| ||||| || || ||| Sbjct 28681 GTCGGCAGAGCGCTGGTACAGCTGGCATGACAGC 28648 >seq1326 Length=97166 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| |||||||| || || |||||||| |||||||| | | || || || || | Sbjct 45038 GTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCTT 44979 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 ||| ||||| | ||||| |||| |||||||||||| |||||||| || || || ||||| Sbjct 44978 AGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCAT 44919 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 29976 ||| | || | |||||| ||||| || || ||| Sbjct 44918 GTCGGCAGAGCGCTGGTACAGCTGGCATGACAGC 44885 >seq1263 Length=68635 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 29823 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29882 ||| |||||||| || || |||||||| |||||||| | | || || || || | Sbjct 46854 GTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACCTT 46913 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 ||| ||||| | ||||| |||| |||||||||||| |||||||| || || || ||||| Sbjct 46914 AGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCCAT 46973 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGC 29976 ||| | || | |||||| ||||| || || ||| Sbjct 46974 GTCGGCAGAGCGCTGGTACAGCTGGCATGACAGC 47007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408372712152302