Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11651 87.8 2e-12 seq7454 87.8 2e-12 seq47051 84.2 3e-11 seq12926 84.2 3e-11 seq12609 84.2 3e-11 >seq11651 Length=16128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| || ||||||||||| ||||| ||||| || || ||||||||||||||||||| Sbjct 4448 AGAATCCCTTCGACTTTATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTCTTTGAGA 4389 Query 65501 AGCGAGTTGGGGACTA 65516 |||| || || || || Sbjct 4388 AGCGGGTGGGCGAGTA 4373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| || ||||||||||| ||||| ||||| || || ||||||||||||||||||| Sbjct 11667 AGAATCCCTTCGACTTTATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTCTTTGAGA 11726 Query 65501 AGCGAGTTGGGGACTA 65516 |||| || || || || Sbjct 11727 AGCGGGTGGGCGAGTA 11742 >seq7454 Length=56988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| || ||||||||||| ||||| ||||| || || ||||||||||||||||||| Sbjct 38430 AGAATCCCTTCGACTTTATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTCTTTGAGA 38489 Query 65501 AGCGAGTTGGGGACTA 65516 |||| || || || || Sbjct 38490 AGCGGGTGGGCGAGTA 38505 >seq47051 Length=145068 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| || ||||| ||||| ||||| ||||| || || ||||||||||||||||||| Sbjct 107285 AGAATCCCTTCGACTTCATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTCTTTGAGA 107226 Query 65501 AGCGAGTTGGGGACTA 65516 |||| || || || || Sbjct 107225 AGCGGGTGGGCGAGTA 107210 >seq12926 Length=13411 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| || ||||| ||||| ||||| ||||| || || ||||||||||||||||||| Sbjct 7684 AGAATCCCTTCGACTTCATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTCTTTGAGA 7625 Query 65501 AGCGAGTTGGGGACTA 65516 |||| || || || || Sbjct 7624 AGCGGGTGGGCGAGTA 7609 >seq12609 Length=34370 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| || ||||| ||||| ||||| ||||| || || ||||||||||||||||||| Sbjct 28652 AGAATCCCTTCGACTTCATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTCTTTGAGA 28593 Query 65501 AGCGAGTTGGGGACTA 65516 |||| || || || || Sbjct 28592 AGCGGGTGGGCGAGTA 28577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596202903581120