Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq45287 104 4e-17 seq45308 95.1 2e-14 seq48 95.1 2e-14 >seq45287 Length=50511 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || || ||||| ||||| || | ||| || ||||| ||||| ||| Sbjct 2221 CCACCGCGCAGCCGCAGGACCAGGTGCAAGGTGGACTCCTTCTGGATATTGTAGTCAGAT 2280 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || || ||| || | || || ||||| || || | | ||| ||||| || || Sbjct 2281 AGAGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCGGGTGGG 2340 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || || || ||||| | ||| | ||| || || ||| || |||||| Sbjct 2341 ATGCCCTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCGCTAGGCTCAACC 2400 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || |||||||| || || |||||||||||||| Sbjct 2401 TCAAGTGTGATGGTCTTGCCTGTTAGGGTCTTGACAAATATTTGCAT 2447 >seq45308 Length=123861 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || || ||||| |||| || | ||| || ||||||||||| ||| Sbjct 119553 CCACCGCGCAGCCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATATTATAGTCAGAT 119494 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || || || || | || || ||||| || || || | ||| || || || || Sbjct 119493 AGAGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 119434 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || || || ||||| | ||| | ||| || || ||| || |||||| Sbjct 119433 ATGCCCTCCTTGTCCTGGATTTTCGCTTTCACATTGTCGATGGTGTCGCTAGGCTCAACC 119374 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || || |||||||||||||| Sbjct 119373 TCAAGTGTGATGGTCTTGCCCGTTAGGGTCTTGACAAATATTTGCAT 119327 >seq48 Length=38877 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || || ||||| |||| || | ||| || ||||||||||| ||| Sbjct 33797 CCACCGCGCAGCCGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATATTATAGTCAGAT 33738 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || || || || | || || ||||| || || || | ||| || || || || Sbjct 33737 AGAGTCCTGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 33678 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || || || || ||||| | ||| | ||| || || ||| || |||||| Sbjct 33677 ATGCCCTCCTTGTCCTGGATTTTCGCTTTCACATTGTCGATGGTGTCGCTAGGCTCAACC 33618 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || || |||||||||||||| Sbjct 33617 TCAAGTGTGATGGTCTTGCCCGTTAGGGTCTTGACAAATATTTGCAT 33571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899101404931680