Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2059 86.0 2e-11 seq1675 86.0 2e-11 seq4325 84.2 6e-11 >seq2059 Length=104123 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 155627 GCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686 ||||||||| |||||||| ||||||||| || | |||||||||||| | | || ||| Sbjct 72760 GCTGTATTCGACAATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCAAGGTGCTGCTG 72819 Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 ||| || ||| || | |||||||| || ||||| || || || ||||| ||||| Sbjct 72820 GTTGCTCTTGGAGTTGCACGAGTCCTTGTACAGCATGTAGGGCGTGCCAGTCTCGATCTG 72879 Query 155747 TGCGTCCAGAAT 155758 || || | ||| Sbjct 72880 GGCCTCGATAAT 72891 >seq1675 Length=86464 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 155627 GCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686 ||||||||| |||||||| ||||||||| || | |||||||||||| | | || ||| Sbjct 15303 GCTGTATTCGACAATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCAAGGTGCTGCTG 15362 Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 ||| || ||| || | |||||||| || ||||| || || || ||||| ||||| Sbjct 15363 GTTGCTCTTGGAGTTGCACGAGTCCTTGTACAGCATGTAGGGCGTGCCAGTCTCGATCTG 15422 Query 155747 TGCGTCCAGAAT 155758 || || | ||| Sbjct 15423 GGCCTCGATAAT 15434 >seq4325 Length=100006 Score = 84.2 bits (92), Expect = 6e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 252532 TCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTC 252591 ||||||| ||| ||| || | | || | ||| | |||||||| |||||||| | Sbjct 78502 TCCATCCGCATATGATAGTTGGATATGTAGACACCCATGGCCTGCTTGCCCATAGCGGAC 78561 Query 252592 TGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA-AC 252650 ||||||||||| |||||| ||| |||| || ||||| || || ||| | ||| || Sbjct 78562 TGGTAAGTATTCCTGGGACTCTGGTTGTGATCGGGGAACGGTAT-AATGGAGGCACAGAC 78620 Query 252651 ACCGAAGATAGTGCTTGGGTGAATTTCACAGTGACTGTAA 252690 |||| || |||| || |||||||| |||||| ||||| Sbjct 78621 GCCGAGAATCATGCTGGGATGAATTTCGCAGTGAGTGTAA 78660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470890293279638