Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6036 114 1e-19 seq10836 113 3e-19 seq10723 113 3e-19 seq5687 113 3e-19 >seq6036 Length=13239 Score = 114 bits (126), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||| | || |||| ||| |||||| ||| || | ||| ||||| ||| Sbjct 1416 CAAAGACTGTGTTGATGGGTTTAA-TGCGACTTGATTTTTTGCAGAATCGCCAATAAGAC 1474 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||||| || ||||||| |||||| || ||||||||||| ||||| || || |||| Sbjct 1475 GTTCTGTGTCAGTAAATGCAACATAGCTCGGCGTTGTGCGATTTCCTTGGTCGTTGGCAA 1534 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| |||| || | ||||| || || | || || || | ||||| Sbjct 1535 TGATTTCCACTTTGCCATGCTGAAAGACACCGACGCAGGAGTAGGTAGTGCCGAGATCAA 1594 Query 282870 TACCAATAGC 282879 | |||||||| Sbjct 1595 TGCCAATAGC 1604 >seq10836 Length=45016 Score = 113 bits (124), Expect = 3e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || || | ||| || | ||| |||||| ||| || | ||| ||||| ||| Sbjct 35529 CAAAGACTGTGTTTGATGGGTTTAATGCGACTTGATTTTTTGCAGAATCGCCAATAAGAC 35588 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||||| || ||||||| |||||| || ||||||||||| ||||| || || |||| Sbjct 35589 GTTCTGTGTCAGTAAATGCAACATAGCTCGGCGTTGTGCGATTTCCTTGGTCGTTGGCAA 35648 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| |||| || | ||||| || || | || || || | ||||| Sbjct 35649 TGATTTCCACTTTGCCATGCTGAAAGACACCGACGCAGGAGTAGGTAGTGCCGAGATCAA 35708 Query 282870 TACCAATAGC 282879 | |||||||| Sbjct 35709 TGCCAATAGC 35718 Score = 111 bits (122), Expect = 1e-18 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | |||||||| ||||| | || | |||| ||| || | ||| || || || Sbjct 26302 CAAACACAGTATTGGAAGGATTTAGCGCCACCTGATTTTTAGCCGAATCACCGATGAGCC 26243 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || || ||||||| |||||| |||||||| || || || ||||| || |||| Sbjct 26242 TTTCGGTATCAGTAAATGCAACATAGCTGGGAGTTGTTCGGTTGCCCTGATCGTTGGCAA 26183 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 |||||||||| ||||| | || | ||||| ||||| | ||||| || | ||||| Sbjct 26182 TAATTTCAACCTTACCGTGCTGGAAGACACCAACACACGAGTAGGTTGTACCCAGATCAA 26123 Query 282870 TACCAATAGCA 282880 ||||||| ||| Sbjct 26122 TACCAATTGCA 26112 >seq10723 Length=45619 Score = 113 bits (124), Expect = 3e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || || | ||| || | ||| |||||| ||| || | ||| ||||| ||| Sbjct 8090 CAAAGACTGTGTTTGATGGGTTTAATGCGACTTGATTTTTTGCAGAATCGCCAATAAGAC 8031 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||||| || ||||||| |||||| || ||||||||||| ||||| || || |||| Sbjct 8030 GTTCTGTGTCAGTAAATGCAACATAGCTCGGCGTTGTGCGATTTCCTTGGTCGTTGGCAA 7971 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| |||| || | ||||| || || | || || || | ||||| Sbjct 7970 TGATTTCCACTTTGCCATGCTGAAAGACACCGACGCAGGAGTAGGTAGTGCCGAGATCAA 7911 Query 282870 TACCAATAGC 282879 | |||||||| Sbjct 7910 TGCCAATAGC 7901 Score = 105 bits (116), Expect = 5e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | |||||||| ||||| | || | |||| ||| || | ||| || || || Sbjct 19489 CAAACACAGTATTGGAAGGATTTAGCGCCACCTGATTTTTAGCCGAATCACCGATGAGCC 19548 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || || ||||||| |||||| ||||| || || || || ||||| || |||| Sbjct 19549 TTTCGGTATCGGTAAATGCAACATAGCTGGGAGTGGTTCGGTTGCCCTGATCGTTGGCAA 19608 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 |||||||||| ||||| | || | ||||| ||||| | ||||| || | ||||| Sbjct 19609 TAATTTCAACCTTACCGTGCTGGAAGACACCAACACACGAGTAGGTTGTACCCAGATCAA 19668 Query 282870 TACCAATAGCA 282880 ||||||| ||| Sbjct 19669 TACCAATTGCA 19679 >seq5687 Length=87099 Score = 113 bits (124), Expect = 3e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || || | ||| || | ||| |||||| ||| || | ||| ||||| ||| Sbjct 78408 CAAAGACTGTGTTTGATGGGTTTAATGCGACTTGATTTTTTGCAGAATCGCCAATAAGAC 78467 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||||| || ||||||| |||||| || ||||||||||| ||||| || || |||| Sbjct 78468 GTTCTGTGTCAGTAAATGCAACATAGCTCGGCGTTGTGCGATTTCCTTGGTCGTTGGCAA 78527 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| ||||| |||| || | ||||| || || | || || || | ||||| Sbjct 78528 TGATTTCCACTTTGCCATGCTGAAAGACACCGACGCAGGAGTAGGTAGTGCCGAGATCAA 78587 Query 282870 TACCAATAGC 282879 | |||||||| Sbjct 78588 TGCCAATAGC 78597 Score = 105 bits (116), Expect = 5e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | |||||||| ||||| | || | |||| ||| || | ||| || || || Sbjct 69802 CAAACACAGTATTGGAAGGATTTAGCGCCACCTGATTTTTAGCCGAATCACCGATGAGCC 69743 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || || ||||||| |||||| ||||| || || || || ||||| || |||| Sbjct 69742 TTTCGGTATCGGTAAATGCAACATAGCTGGGAGTGGTTCGGTTGCCCTGATCGTTGGCAA 69683 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 |||||||||| ||||| | || | ||||| ||||| | ||||| || | ||||| Sbjct 69682 TAATTTCAACCTTACCGTGCTGGAAGACACCAACACACGAGTAGGTTGTACCCAGATCAA 69623 Query 282870 TACCAATAGCA 282880 ||||||| ||| Sbjct 69622 TACCAATTGCA 69612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738216164409324