Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3090 134 2e-26 seq4616 127 4e-24 seq46594 125 1e-23 seq1520 125 1e-23 >seq3090 Length=107577 Score = 134 bits (148), Expect = 2e-26 Identities = 235/342 (69%), Gaps = 0/342 (0%) Strand=Plus/Minus Query 58315 CTATAGTTATGTTTGTCAACCTATAGATTATTCAGATAACGTTTACGAGGTTAGGATAGC 58374 ||| |||||| | ||||| || | || ||||| || || ||||||| | || || || Sbjct 9012 CTACAGTTATCTCTGTCAGCCAGTTGACTATTCTGACAATCCTTACGAGTTAAGAATCGC 8953 Query 58375 CAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTT 58434 || ||| | |||||||||||| | || || | || || | | || || | || || Sbjct 8952 CAAAGCGCTCTGGTGGTACTATTTCTCAAAGTGCATCGAGTTTATGGACACTATATTCTT 8893 Query 58435 CATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTAT 58494 | | | || ||| |||||| |||| ||||| ||||| || ||||| ||||| Sbjct 8892 TGTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCATCACGCCACTAT 8833 Query 58495 GTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGC 58554 ||| | | | ||| | || | |||||| | |||| |||||| | ||||| ||||| Sbjct 8832 GTTCCCAATTTGGTGGATTGGAGTGAAATGGGTACCAGGTGGTCAGTCGTTTTTTGGCGC 8773 Query 58555 TCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATGGCGGCGTGTGG 58614 | | |||| ||||||||||| || || |||||||| || |||||| || || ||| Sbjct 8772 TATGATGAACTCTTTTATCCACGTCATCATGTATAGCTACTATGGTTTGAGCTCGCTTGG 8713 Query 58615 ACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTAC 58656 | | | | | ||||| | ||||||||||| || || || Sbjct 8712 AGAGAGCGTCCAGAAGTACCTGTGGTGGAAGCGGTATCTCAC 8671 >seq4616 Length=10833 Score = 127 bits (140), Expect = 4e-24 Identities = 204/291 (70%), Gaps = 3/291 (1%) Strand=Plus/Minus Query 58315 CTATAGTTATGTTTGTCAACCTATAGATTATTCAGATAACGTTTACGAGGTTAGGATAGC 58374 ||| |||||| | || || || | || ||||| || || ||||||| | || || || Sbjct 4652 CTACAGTTATCTCTGCCAGCCAGTTGACTATTCTGACAATCCTTACGAGTTAAGAATCGC 4593 Query 58375 CAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTT 58434 || |||| | |||||||||||| | ||||| | || || | | || || | || || Sbjct 4592 CAAAGCACTCTGGTGGTACTATTTCTCTAAGTGCATCGAGTTTATGGACACTATATTCTT 4533 Query 58435 CATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTAT 58494 | | | || ||| |||||| |||| ||||| ||||| || ||||| || || Sbjct 4532 TGTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCATCACGCCACCAT 4473 Query 58495 GTTTACT--TTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGC 58552 |||| | || || ||| | || | |||||| | |||| |||||| | ||||| ||| Sbjct 4472 GTTTCCCAATTTGG-TGGATTGGAGTGAAATGGGTACCAGGTGGTCAGTCGTTTTTTGGC 4414 Query 58553 GCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATG 58603 ||| | |||| ||||||||||| || || ||||| || || |||||| || Sbjct 4413 GCTATGATGAACTCTTTTATCCACGTCATCATGTACAGCTACTATGGTTTG 4363 >seq46594 Length=67017 Score = 125 bits (138), Expect = 1e-23 Identities = 201/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 58315 CTATAGTTATGTTTGTCAACCTATAGATTATTCAGATAACGTTTACGAGGTTAGGATAGC 58374 ||| |||||| | || || || | || ||||| || || ||||||| | || || || Sbjct 17213 CTACAGTTATCTCTGCCAGCCAGTTGACTATTCTGACAATCCTTACGAGTTAAGAATCGC 17154 Query 58375 CAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTT 58434 || |||| | |||||||||||| | ||||| | || || | | || || | || || Sbjct 17153 CAAAGCACTCTGGTGGTACTATTTCTCTAAGTGCATCGAGTTTATGGACACTATATTCTT 17094 Query 58435 CATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTAT 58494 | | | || ||| |||||| |||| ||||| ||||| || ||||| || || Sbjct 17093 TGTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCATCACGCCACCAT 17034 Query 58495 GTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGC 58554 ||| | | | ||| | || | |||||| | |||| |||||| | ||||| ||||| Sbjct 17033 GTTCCCAATTTGGTGGATTGGAGTGAAATGGGTACCAGGTGGTCAGTCGTTTTTTGGCGC 16974 Query 58555 TCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATG 58603 | | |||| ||||||||||| || || ||||| || || |||||| || Sbjct 16973 TATGATGAACTCTTTTATCCACGTCATCATGTACAGCTACTATGGTTTG 16925 >seq1520 Length=56574 Score = 125 bits (138), Expect = 1e-23 Identities = 201/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 58315 CTATAGTTATGTTTGTCAACCTATAGATTATTCAGATAACGTTTACGAGGTTAGGATAGC 58374 ||| |||||| | || || || | || ||||| || || ||||||| | || || || Sbjct 45861 CTACAGTTATCTCTGCCAGCCAGTTGACTATTCTGACAATCCTTACGAGTTAAGAATCGC 45920 Query 58375 CAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTT 58434 || |||| | |||||||||||| | ||||| | || || | | || || | || || Sbjct 45921 CAAAGCACTCTGGTGGTACTATTTCTCTAAGTGCATCGAGTTTATGGACACTATATTCTT 45980 Query 58435 CATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTAT 58494 | | | || ||| |||||| |||| ||||| ||||| || ||||| || || Sbjct 45981 TGTCTTGCGCAAGAAGAATAATCAAATTAGTTTTCTGCACGTTTACCATCACGCCACCAT 46040 Query 58495 GTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGGCATTTTTCGGCGC 58554 ||| | | | ||| | || | |||||| | |||| |||||| | ||||| ||||| Sbjct 46041 GTTCCCAATTTGGTGGATTGGAGTGAAATGGGTACCAGGTGGTCAGTCGTTTTTTGGCGC 46100 Query 58555 TCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATG 58603 | | |||| ||||||||||| || || ||||| || || |||||| || Sbjct 46101 TATGATGAACTCTTTTATCCACGTCATCATGTACAGCTACTATGGTTTG 46149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902855895720640