Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq45377 167 3e-36 seq1326 167 3e-36 seq1263 167 3e-36 >seq45377 Length=76098 Score = 167 bits (184), Expect = 3e-36 Identities = 192/257 (75%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 |||||||| ||| ||||| || || || |||||||||||||| |||| | | |||| Sbjct 28811 CGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGC 28752 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 | ||||| | || | ||| | ||||||||| | ||||||||| || || ||||| || | Sbjct 28751 CTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACAC 28692 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGC----C 147105 |||| |||||||| | || | ||||||||||||||| || ||| || || || | Sbjct 28691 CCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGC 28632 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 | ||| | |||| ||||| ||| || |||||||| ||||| | |||| | |||||| Sbjct 28631 A-GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGG 28573 Query 147166 TTCCAGGCCGAGACCAC 147182 ||||| || |||| ||| Sbjct 28572 TTCCATGCTGAGATCAC 28556 >seq1326 Length=97166 Score = 167 bits (184), Expect = 3e-36 Identities = 192/257 (75%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 |||||||| ||| ||||| || || || |||||||||||||| |||| | | |||| Sbjct 45048 CGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGC 44989 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 | ||||| | || | ||| | ||||||||| | ||||||||| || || ||||| || | Sbjct 44988 CTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACAC 44929 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGC----C 147105 |||| |||||||| | || | ||||||||||||||| || ||| || || || | Sbjct 44928 CCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGC 44869 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 | ||| | |||| ||||| ||| || |||||||| ||||| | |||| | |||||| Sbjct 44868 A-GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGG 44810 Query 147166 TTCCAGGCCGAGACCAC 147182 ||||| || |||| ||| Sbjct 44809 TTCCATGCTGAGATCAC 44793 >seq1263 Length=68635 Score = 167 bits (184), Expect = 3e-36 Identities = 192/257 (75%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 |||||||| ||| ||||| || || || |||||||||||||| |||| | | |||| Sbjct 46844 CGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGC 46903 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 | ||||| | || | ||| | ||||||||| | ||||||||| || || ||||| || | Sbjct 46904 CTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACAC 46963 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGC----C 147105 |||| |||||||| | || | ||||||||||||||| || ||| || || || | Sbjct 46964 CCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGC 47023 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 | ||| | |||| ||||| ||| || |||||||| ||||| | |||| | |||||| Sbjct 47024 A-GTACAGCTGGAACAGGCAGTGACAGGGCGGCAGGGCCATCTGGTGCAGCTGGGCGGGG 47082 Query 147166 TTCCAGGCCGAGACCAC 147182 ||||| || |||| ||| Sbjct 47083 TTCCATGCTGAGATCAC 47099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583129344513600