Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq11651 104 7e-17 seq7454 104 7e-17 seq47051 98.7 3e-15 seq12926 95.1 4e-14 seq12609 95.1 4e-14 seq11958 95.1 4e-14 seq4909 95.1 4e-14 seq2059 87.8 6e-12 seq1675 87.8 6e-12 >seq11651 Length=16128 Score = 104 bits (114), Expect = 7e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 4825 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCTGTTGAGGGCATCTTCTTCAGCGGCAG 4766 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 4765 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 4707 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || |||||||| ||||| || | || |||||| ||||| || Sbjct 4706 ACGAGCTCATCAGTCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCT 4658 Score = 104 bits (114), Expect = 7e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 11292 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCTGTTGAGGGCATCTTCTTCAGCGGCAG 11351 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 11352 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 11410 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || |||||||| ||||| || | || |||||| ||||| || Sbjct 11411 ACGAGCTCATCAGTCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCT 11459 >seq7454 Length=56988 Score = 104 bits (114), Expect = 7e-17 Identities = 125/169 (74%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 38056 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCTGTTGAGGGCATCTTCTTCAGCGGCAG 38115 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 38116 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 38174 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || |||||||| ||||| || | || |||||| ||||| || Sbjct 38175 ACGAGCTCATCAGTCGCGACGAAGGCCTCCACACCGACTTTGCCTGCCT 38223 >seq47051 Length=145068 Score = 98.7 bits (108), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 107659 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCCGTTGAGGGCATCTTCTTCAGCGGCAG 107600 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 107599 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 107541 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || |||||||| ||||| || | || |||||| || || || Sbjct 107540 ACGAGCTCATCAGTCGTGACGAAGGCCTCCACACCGACTTTGCTTGCCT 107492 >seq12926 Length=13411 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 8058 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCCGTTGAGGGCATCTTCTTCAGCGGCAG 7999 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 7998 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 7940 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || ||||| || ||||| || | || ||||| ||||| || Sbjct 7939 ACGAGCTCATCAGCCGCGACGAAGGCCTCCACACTGACTTTGCCTGCCT 7891 >seq12609 Length=34370 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 29026 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCCGTTGAGGGCATCTTCTTCAGCGGCAG 28967 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 28966 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 28908 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || ||||| || ||||| || | || ||||| ||||| || Sbjct 28907 ACGAGCTCATCAGCCGCGACGAAGGCCTCCACACTGACTTTGCCTGCCT 28859 >seq11958 Length=54492 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 32724 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCTGTTGAGGGCATCTTCTTCAGCGGCAG 32783 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 32784 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 32842 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || ||||| || ||||| || | || ||||| ||||| || Sbjct 32843 ACGAGCTCATCAGCCGCGACGAAGGCCTCCACACTGACTTTGCCTGCCT 32891 >seq4909 Length=66758 Score = 95.1 bits (104), Expect = 4e-14 Identities = 123/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||||| |||||| | || || || || | || || || | || || |||||||| Sbjct 51522 CACCTTCGGCGAGCGCGTGGTGGCCTTCGCAGCCGTTGAGGGCATCTTTTTCAGCGGCAG 51463 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| || |||||||| |||| ||||| || || |||| || |||||||| || | Sbjct 51462 C-TTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGCCTCATGCCAGGCCTGACCTTCAGCA 51404 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || ||||| || ||||| || | || ||||| ||||| || Sbjct 51403 ACGAGCTCATCAGCCGCGACGAAGGCCTCCACACTGACTTTGCCTGCCT 51355 >seq2059 Length=104123 Score = 87.8 bits (96), Expect = 6e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| | || ||||| | |||||||||||| ||||||||||||||||||||| | || Sbjct 70969 CACTTCTTCGCCTGGCGCAGCGGCCTGAAGACCGGCATGTACTACCTGCGCACCAGGCCG 70910 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| | || ||||| |||||||| Sbjct 70909 GCCGCCCAGCCAATCCAGTTCACCGT 70884 >seq1675 Length=86464 Score = 87.8 bits (96), Expect = 6e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| | || ||||| | |||||||||||| ||||||||||||||||||||| | || Sbjct 13605 CACTTCTTCGCCTGGCGCAGCGGCCTGAAGACCGGCATGTACTACCTGCGCACCAGGCCG 13546 Query 256595 GCGGCCGACCCGATCCAATTCACCGT 256620 || ||| | || ||||| |||||||| Sbjct 13545 GCCGCCCAGCCAATCCAGTTCACCGT 13520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587335281808430