Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11651 93.3 5e-14 seq7454 93.3 5e-14 seq47051 87.8 2e-12 seq12926 87.8 2e-12 seq12609 87.8 2e-12 seq2059 86.0 8e-12 seq1675 86.0 8e-12 seq11958 84.2 3e-11 seq4909 84.2 3e-11 >seq11651 Length=16128 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||||||||||||||||||||||||| || || ||||| ||||| |||||| Sbjct 4373 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATA 4432 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 4433 AAGTCGAAGGGATTCT 4448 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||||||||||||||||||||||||| || || ||||| ||||| |||||| Sbjct 11742 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATA 11683 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 11682 AAGTCGAAGGGATTCT 11667 >seq7454 Length=56988 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||||||||||||||||||||||||| || || ||||| ||||| |||||| Sbjct 38505 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATA 38446 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 38445 AAGTCGAAGGGATTCT 38430 >seq47051 Length=145068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||||||||||||||||||||||||| || || ||||| ||||| ||||| Sbjct 107210 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATG 107269 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 107270 AAGTCGAAGGGATTCT 107285 >seq12926 Length=13411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||||||||||||||||||||||||| || || ||||| ||||| ||||| Sbjct 7609 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATG 7668 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 7669 AAGTCGAAGGGATTCT 7684 >seq12609 Length=34370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||||||||||||||||||||||||| || || ||||| ||||| ||||| Sbjct 28577 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATG 28636 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 28637 AAGTCGAAGGGATTCT 28652 >seq2059 Length=104123 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 111245 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-TGTACTCTAAAATTTCTGTACATAA 111303 |||| |||||| || ||| |||||| | ||| |||| || | ||| || || || | Sbjct 72728 GCCAGATTGCACACTGCCACCTCATC-TGGGCTGCTGTATTCGACAATCTCCGTGCACAG 72786 Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363 ||| || | ||| || || || | | || ||||| ||||| |||||||| ||||| Sbjct 72787 GTTTGAGCACTTGATGGTGCCAAGGTGCTGCTGGTTGCTCTTGGAGTTGCACGAGTCCTT 72846 Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||| |||||||||||||| || ||||| |||| | | || ||| || | ||| Sbjct 72847 GTACAGCATGTAGGGCGTGCCAGTCTCGATCTGGGCCTCGATAATTGCGTACCA 72900 >seq1675 Length=86464 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 111245 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTG-TGTACTCTAAAATTTCTGTACATAA 111303 |||| |||||| || ||| |||||| | ||| |||| || | ||| || || || | Sbjct 15271 GCCAGATTGCACACTGCCACCTCATC-TGGGCTGCTGTATTCGACAATCTCCGTGCACAG 15329 Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363 ||| || | ||| || || || | | || ||||| ||||| |||||||| ||||| Sbjct 15330 GTTTGAGCACTTGATGGTGCCAAGGTGCTGCTGGTTGCTCTTGGAGTTGCACGAGTCCTT 15389 Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||| |||||||||||||| || ||||| |||| | | || ||| || | ||| Sbjct 15390 GTACAGCATGTAGGGCGTGCCAGTCTCGATCTGGGCCTCGATAATTGCGTACCA 15443 >seq11958 Length=54492 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || ||||||||||||||||||||||| || || || ||||| ||||| ||||| Sbjct 33173 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTTTTGCCCTCCAGGCTGATGTTCTCCATG 33114 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 33113 AAGTCGAAGGGATTCT 33098 >seq4909 Length=66758 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || |||||||||||||||||||| ||||| || || ||||| ||||| ||||| Sbjct 51073 TACTCGCCCACCCGCTTCTCAAAGAAGTTCGTCTTGCCCTCCAGGCTGATGTTCTCCATG 51132 Query 122431 AAGTCAAATGGATTCT 122446 ||||| || ||||||| Sbjct 51133 AAGTCGAAGGGATTCT 51148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627645964430400