Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7454 100 4e-16 seq11651 95.1 1e-14 seq2059 82.4 9e-11 seq1675 82.4 9e-11 >seq7454 Length=56988 Score = 100 bits (110), Expect = 4e-16 Identities = 289/434 (67%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||||||||||| |||||||| ||||| || |||| |||||| ||||||||| Sbjct 38505 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATA 38446 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || || |||| ||||| | ||| |||| | | | || |||| || | Sbjct 38445 AAGTCGAAGGGATTCTCAGAGTTGAAGGCCTTG-GGGCAGTTC-AGCTCGGTGAGCAGTC 38388 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 || | ||| |||| ||||| |||| || ||||||| ||||||||| || Sbjct 38387 TGTCAGCCACGAACTCGATGTAGCGGCACATGGAGGCGCAGTTCATGCCGATGAGG-GAC 38329 Query 129906 A-TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | || | || ||| | ||| | || ||| ||| ||| || || || | ||| | Sbjct 38328 ACCGGCAAAGCCTCCGTCAGGAAGCTCTGCTCGATGCGCACCGCGTCACGGATGATCTCC 38269 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAAC 130021 | ||| || ||| || | || || || | | | || || |||||| Sbjct 38268 TCGATGCGCTGACTGCTTGG-CGGCCGCTGAAGGTGGCGGA-ACATCAGGCA-GGCAAAG 38212 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || |||||| || ||||| || |||||| || || |||| ||| ||||||||| Sbjct 38211 TCGGTGTGGAGGCCTTCGTCGCGACTGATGAGCTCGTTGCTGAAGGTCAGGCCTGGCATG 38152 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||||| |||||| | || || ||| ||||||||| ||||| Sbjct 38151 AGGCCGCGCTTCTTCAGCCAGAAGACGGCGGCGAAGCTGCCGCTGAAGAAGATGCCCTCA 38092 Query 130142 ACACACGCGAACGC 130155 ||| ||||| || Sbjct 38091 ACAGCTGCGAAGGC 38078 >seq11651 Length=16128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 289/436 (66%), Gaps = 13/436 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||||||||||| |||||||| ||||| || |||| |||||| ||||||||| Sbjct 4373 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATA 4432 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || || |||| ||||| | ||| |||| | | | || |||| || | Sbjct 4433 AAGTCGAAGGGATTCTCAGAGTTGAAGGCCTTG-GGGCAGTTC-AGCTCGGTGAGCAGTC 4490 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 || | ||| |||| ||||| |||| || ||||||| ||||||||| || Sbjct 4491 TGTCAGCCACGAACTCGATGTAGCGGCACATGGAGGCGCAGTTCATGCCGATGAGG-GAC 4549 Query 129906 A-TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | || | || ||| | ||| | || ||| ||| ||| || || || | ||| | Sbjct 4550 ACCGGCAAAGCCTCCGTCAGGAAGCTCTGCTCGATGCGCACCGCGTCACGGATGATCTCC 4609 Query 129965 TGAATGGTCTCCGTGCCAG--GTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAA 130019 | ||| || || | | | | || || || | | | || || ||||| Sbjct 4610 TCGATGCGCTGACTGACTGCTGGCGGCCGCTGAAGGTGGCGGA-ACATCAGGCA-GGCAA 4667 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || |||||| || ||||| || |||||| || || |||| ||| ||||||| Sbjct 4668 AGTCGGTGTGGAGGCCTTCGTCGCGACTGATGAGCTCGTTGCTGAAGGTCAGGCCTGGCA 4727 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||||| |||||| | || || ||| ||||||||| |||| Sbjct 4728 TGAGGCCGCGCTTCTTCAGCCAGAAGACGGCGGCGAAGCTGCCGCTGAAGAAGATGCCCT 4787 Query 130140 CCACACACGCGAACGC 130155 | ||| ||||| || Sbjct 4788 CAACAGCTGCGAAGGC 4803 Score = 93.3 bits (102), Expect = 5e-14 Identities = 289/435 (66%), Gaps = 13/435 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||||||||||| |||||||| ||||| || |||| |||||| ||||||||| Sbjct 11742 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTGCCCTCCAGGCTGATGTTCTCCATA 11683 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || || |||| ||||| | ||| |||| | | | || |||| || | Sbjct 11682 AAGTCGAAGGGATTCTCAGAGTTGAAGGCCTTG-GGGCAGTTC-AGCTCGGTGAGCAGTC 11625 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGA-GGTTA 129904 || | ||| |||| ||||| |||| || ||||||| ||||||| || | Sbjct 11624 TGTCAGCCACGAACTCGATGTAGCGGCACAT-GGAGCGCAGTTCATGCCGATGAGGGGGA 11566 Query 129905 CA-TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || | || ||| | ||| | || ||| ||| ||| || || || | ||| | Sbjct 11565 CACCGGCAAAGCCTCCGTCAGGAAGCTCTGCTCGATGCGCACCGCGTCACGGATGATCTC 11506 Query 129964 GTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC---CACGGCAAA 130020 | ||| || ||| || | || || || | | | || || |||||| Sbjct 11505 CTCGATGCGCTGACTGCTTGG-CGGCCGCTGAAGGTGGCGGA-ACATCAGGCA-GGCAAA 11449 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| || ||||| || |||||| || || |||| ||| |||||||| Sbjct 11448 GTCGGTGTGGAGGCCTTCGTCGCGACTGATGAGCTCGTTGCTGAAGGTCAGGCCTGGCAT 11389 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||||| |||||| | || || ||| ||||||||| ||||| Sbjct 11388 GAGGCCGCGCTTCTTCAGCCAGAAGACGGCGGCGAAGCTGCCGCTGAAGAAGATGCCCTC 11329 Query 130141 CACACACGCGAACGC 130155 ||| ||||| || Sbjct 11328 AACAGCTGCGAAGGC 11314 >seq2059 Length=104123 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 118088 CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGAC 118147 ||||| ||| | |||||||||||| | | | |||| || || |||||| ||| || Sbjct 71336 CTTCAGATCGTCTGACCAGAGACCCAGCCTGGTGAGGTCGCGCAGCAGATGCGGATTAAC 71395 Query 118148 AACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAA 118207 || || || || | || || || || | |||| | ||||| | ||||| Sbjct 71396 CACCTGGAATTCGCCGGACAGAACCCGCCTGCTGTACACATTGCTAGTGTAGGCCTCAAT 71455 Query 118208 GCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAG 118267 || ||||||||| || | ||||| ||||||||||| || ||||| || |||| || || Sbjct 71456 GCTCTCATTGTTGCCGAGAATTTGAGCTGTGGAGGCGGTAGGCATCGGGGCCAGCAGGAG 71515 Query 118268 GCTGTTACGGAGACC 118282 ||| || || || || Sbjct 71516 GCTATTGCGCAGGCC 71530 >seq1675 Length=86464 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 118088 CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGAC 118147 ||||| ||| | |||||||||||| | | | |||| || || |||||| ||| || Sbjct 13972 CTTCAGATCGTCTGACCAGAGACCCAGCCTGGTGAGGTCGCGCAGCAGATGCGGATTAAC 14031 Query 118148 AACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAA 118207 || || || || | || || || || | |||| | ||||| | ||||| Sbjct 14032 CACCTGGAATTCGCCGGACAGAACCCGCCTGCTGTACACATTGCTAGTGTAGGCCTCAAT 14091 Query 118208 GCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAG 118267 || ||||||||| || | ||||| ||||||||||| || ||||| || |||| || || Sbjct 14092 GCTCTCATTGTTGCCGAGAATTTGAGCTGTGGAGGCGGTAGGCATCGGGGCCAGCAGGAG 14151 Query 118268 GCTGTTACGGAGACC 118282 ||| || || || || Sbjct 14152 GCTATTGCGCAGGCC 14166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618055063343440