Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq47051 87.8 2e-12 seq11651 84.2 3e-11 seq7454 84.2 3e-11 seq12926 82.4 9e-11 seq12609 82.4 9e-11 seq4909 82.4 9e-11 >seq47051 Length=145068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 |||||||| ||||||||| || |||| ||| | | ||||| |||||||| || Sbjct 107625 GTTGAGGGCATCTTCTTCAGCGGCAGCTTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGGC 107566 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 ||||||||||| || |||| ||||||||| ||| ||||||||| || |||||| Sbjct 107565 CTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGTGACGAAGGCCTCCACACC 107506 Query 94948 GAGTTTGC 94955 || ||||| Sbjct 107505 GACTTTGC 107498 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 95161 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 95220 ||||| ||||||| || ||||||||||||||||| ||||| || || ||||| |||||| Sbjct 107292 AACTCTGAGAATCCCTTCGACTTCATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTC 107233 Query 95221 TTCGAAAAGAGGGTTGGGGACTA 95243 || || ||| |||| || || || Sbjct 107232 TTTGAGAAGCGGGTGGGCGAGTA 107210 >seq11651 Length=16128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||||||||| ||||||||| || |||| ||| | | ||||| |||||||| || Sbjct 4792 TGTTGAGGGCATCTTCTTCAGCGGCAGCTTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGG 4733 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 ||||||||||| || |||| ||||||||| ||| ||| ||||| || |||||| Sbjct 4732 CCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGCGACGAAGGCCTCCACAC 4673 Query 94947 AGAGTTTGC 94955 || ||||| Sbjct 4672 CGACTTTGC 4664 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||||||||| ||||||||| || |||| ||| | | ||||| |||||||| || Sbjct 11325 TGTTGAGGGCATCTTCTTCAGCGGCAGCTTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGG 11384 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 ||||||||||| || |||| ||||||||| ||| ||| ||||| || |||||| Sbjct 11385 CCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGCGACGAAGGCCTCCACAC 11444 Query 94947 AGAGTTTGC 94955 || ||||| Sbjct 11445 CGACTTTGC 11453 >seq7454 Length=56988 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||||||||| ||||||||| || |||| ||| | | ||||| |||||||| || Sbjct 38089 TGTTGAGGGCATCTTCTTCAGCGGCAGCTTCGCCGCCGTCTTCTGGCTGAAGAAGCGCGG 38148 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 94946 ||||||||||| || |||| ||||||||| ||| ||| ||||| || |||||| Sbjct 38149 CCTCATGCCAGGCCTGACCTTCAGCAACGAGCTCATCAGTCGCGACGAAGGCCTCCACAC 38208 Query 94947 AGAGTTTGC 94955 || ||||| Sbjct 38209 CGACTTTGC 38217 >seq12926 Length=13411 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 95161 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 95220 ||||| ||||||| || ||||||||||||||||| ||||| || || ||||| |||||| Sbjct 7691 AACTCTGAGAATCCCTTCGACTTCATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTC 7632 Query 95221 TTCGAAAAGAGGGTTGGGGACTA 95243 || || ||| |||| || || || Sbjct 7631 TTTGAGAAGCGGGTGGGCGAGTA 7609 >seq12609 Length=34370 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 95161 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 95220 ||||| ||||||| || ||||||||||||||||| ||||| || || ||||| |||||| Sbjct 28659 AACTCTGAGAATCCCTTCGACTTCATGGAGAACATCAGCCTGGAGGGCAAGACCAACTTC 28600 Query 95221 TTCGAAAAGAGGGTTGGGGACTA 95243 || || ||| |||| || || || Sbjct 28599 TTTGAGAAGCGGGTGGGCGAGTA 28577 >seq4909 Length=66758 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 95161 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 95220 ||||| ||||||| || ||||||||||||||||| ||||| || || ||||| |||||| Sbjct 51155 AACTCTGAGAATCCCTTCGACTTCATGGAGAACATCAGCCTGGAGGGCAAGACGAACTTC 51096 Query 95221 TTCGAAAAGAGGGTTGGGGACTA 95243 || || ||| |||| || || || Sbjct 51095 TTTGAGAAGCGGGTGGGCGAGTA 51073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582902284167760