Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1263 105 6e-18 seq45377 102 7e-17 seq1326 102 7e-17 >seq1263 Length=68635 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118426 AGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTC 118485 ||| | ||||||||| | ||||||| |||| || ||| | || ||| || Sbjct 46792 AGTTTAGGAAACGGGCGCGGCTCCCGGCTGAGCTGCTCGCGCAGCGCGGCATCGTGGTTG 46851 Query 118486 ATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGG 118545 | || || |||||||| |||| || || | || || | || || || ||||||| Sbjct 46852 GTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACC 46911 Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 | ||||||||| | || | || | ||||||||| | |||||| || |||||||||||| Sbjct 46912 TTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCC 46971 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGC 118641 ||||| || || | |||||||| ||||| || ||| Sbjct 46972 ATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGC 47007 >seq45377 Length=76098 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118426 AGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTC 118485 ||| | ||||||||| | |||| || |||| || ||| | || ||| || Sbjct 28863 AGTTTAGGAAACGGGCGCGGCTGCCGGCTGAGCTGCTCGCGCAGCGCGGCATCGTGGTTG 28804 Query 118486 ATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGG 118545 | || || |||||||| |||| || || | || || | || || || ||||||| Sbjct 28803 GTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACC 28744 Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 | ||||||||| | || | || | ||||||||| | |||||| || |||||||||||| Sbjct 28743 TTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCC 28684 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGC 118641 ||||| || || | |||||||| ||||| || ||| Sbjct 28683 ATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGC 28648 >seq1326 Length=97166 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 118426 AGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTC 118485 ||| | ||||||||| | |||| || |||| || ||| | || ||| || Sbjct 45100 AGTTTAGGAAACGGGCGCGGCTGCCGGCTGAGCTGCTCGCGCAGCGCGGCATCGTGGTTG 45041 Query 118486 ATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGG 118545 | || || |||||||| |||| || || | || || | || || || ||||||| Sbjct 45040 GTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCACC 44981 Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 | ||||||||| | || | || | ||||||||| | |||||| || |||||||||||| Sbjct 44980 TTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACCC 44921 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGC 118641 ||||| || || | |||||||| ||||| || ||| Sbjct 44920 ATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGC 44885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414228400686136