Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2636 89.7 4e-13 seq1807 87.8 1e-12 seq767 87.8 1e-12 >seq2636 Length=142077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/139 (75%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 103374 GACGTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCGCCGTGCGT---TTC 103430 ||||||||||| ||| || ||||| || | |||| || |||||||| || || Sbjct 25627 GACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTT 25686 Query 103431 GCCGGTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTGTCGCCAAACTC 103490 || | |||| ||||| |||| |||||| ||||||||| | |||||||||| || Sbjct 25687 GCACG---GATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTC 25743 Query 103491 GTGCACGTGAAAACCGTGC 103509 |||||||||||| |||||| Sbjct 25744 GTGCACGTGAAAGCCGTGC 25762 >seq1807 Length=57471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 103375 ACGTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCGCCGTGCGT---TTCG 103431 |||||||||| ||| || ||||| || | |||| || |||||||| || || | Sbjct 43940 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 43999 Query 103432 CCGGTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTGTCGCCAAACTCG 103491 | | |||| ||||| |||| |||||| ||||||||| | |||||||||| ||| Sbjct 44000 CACG---GATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCG 44056 Query 103492 TGCACGTGAAAACCGTGC 103509 ||||||||||| |||||| Sbjct 44057 TGCACGTGAAAGCCGTGC 44074 >seq767 Length=230551 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 103375 ACGTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCGCCGTGCGT---TTCG 103431 |||||||||| ||| || ||||| || | |||| || |||||||| || || | Sbjct 117434 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 117493 Query 103432 CCGGTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTGTCGCCAAACTCG 103491 | | |||| ||||| |||| |||||| ||||||||| | |||||||||| ||| Sbjct 117494 CACG---GATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCG 117550 Query 103492 TGCACGTGAAAACCGTGC 103509 ||||||||||| |||||| Sbjct 117551 TGCACGTGAAAGCCGTGC 117568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409415286954066