Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1263 136 3e-27 seq45377 132 4e-26 seq1326 123 2e-23 >seq1263 Length=68635 Score = 136 bits (150), Expect = 3e-27 Identities = 246/351 (70%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTC-TCCA 29588 |||||| |||||||| |||| ||||| ||| | ||| || || |||| || | Sbjct 46716 GTGAGGCTCGTAGCCAACCAGCTTGAAATGCTCGGTCTTGAAATCCTCCAATCTGGTGGG 46775 Query 29589 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCA 29648 ||| | | ||| |||| | ||||| || | ||||||| |||||| | || Sbjct 46776 CCCATCGGCA-ATCTCCAGTTTAGGAAACGGGCGCGGCTCCCGGCTGAGCTGCTCGCGCA 46834 Query 29649 GCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCG 29708 ||| | |||||| ||| ||||||||||| || |||||||| |||||||| | | Sbjct 46835 GCGCGGCATCGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAG 46894 Query 29709 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29768 || || || || | ||| ||||| | ||||| |||| |||||||||||| |||| Sbjct 46895 CAGTCAGGCCTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAA 46954 Query 29769 AGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT 29828 ||||||| || || |||||||| | || | |||||| |||||||| || ||| || | Sbjct 46955 AGGGCACACCCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCAT 47014 Query 29829 C-GCT---CACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCAT 29874 | ||| || ||| | ||| ||| |||| || || || || |||||||| Sbjct 47015 CTGCTGTGCA-GTACAGCTGGAACA-GGCAGTGACAGGGCGGCAGGGCCAT 47063 >seq45377 Length=76098 Score = 132 bits (146), Expect = 4e-26 Identities = 245/351 (70%), Gaps = 9/351 (3%) Strand=Plus/Minus Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTC-TCCA 29588 |||||| |||||||| |||| ||||| ||| | ||| || || |||| || | Sbjct 28939 GTGAGGCTCGTAGCCAACCAGCTTGAAATGCTCGGTCTTGAAATCCTCCAATCTGGTGGG 28880 Query 29589 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCA 29648 ||| | | ||| |||| | ||||| || | |||| || |||||| | || Sbjct 28879 CCCATCGGCA-ATCTCCAGTTTAGGAAACGGGCGCGGCTGCCGGCTGAGCTGCTCGCGCA 28821 Query 29649 GCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCG 29708 ||| | |||||| ||| ||||||||||| || |||||||| |||||||| | | Sbjct 28820 GCGCGGCATCGTGGTTGGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAG 28761 Query 29709 GTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAA 29768 || || || || | ||| ||||| | ||||| |||| |||||||||||| |||| Sbjct 28760 CAGTCAGGCCTGTCACCTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAA 28701 Query 29769 AGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT 29828 ||||||| || || |||||||| | || | |||||| |||||||| || ||| || | Sbjct 28700 AGGGCACACCCAGACCCATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCAT 28641 Query 29829 C-GCT---CACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCAT 29874 | ||| || ||| | ||| ||| |||| || || || || |||||||| Sbjct 28640 CTGCTGTGCA-GTACAGCTGGAACA-GGCAGTGACAGGGCGGCAGGGCCAT 28592 >seq1326 Length=97166 Score = 123 bits (136), Expect = 2e-23 Identities = 196/275 (71%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 29605 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTC 29664 |||| | ||||| || | |||| || |||||| | ||||| | |||||| Sbjct 45101 CAGTTTAGGAAACGGGCGCGGCTGCCGGCTGAGCTGCTCGCGCAGCGCGGCATCGTGGTT 45042 Query 29665 AAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29724 ||| ||||||||||| || |||||||| |||||||| | | || || || || Sbjct 45041 GGTGTACACGTGAGCATCGCCAAGGGTGTGCACAAACTCCCAAGCAGTCAGGCCTGTCAC 44982 Query 29725 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCC 29784 | ||| ||||| | ||||| |||| |||||||||||| ||||||||||| || || || Sbjct 44981 CTTAGCAATCATATGGGTGAGCAGAGCGTAGCTGGCGATATTAAAGGGCACACCCAGACC 44922 Query 29785 CATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTC-GCT---CACGTAAA 29840 |||||| | || | |||||| |||||||| || ||| || || ||| || ||| | Sbjct 44921 CATGTCGGCAGAGCGCTGGTACAGCTGGCATGACAGCCTGCCATCTGCTGTGCA-GTACA 44863 Query 29841 ACTGACACATGGCA-TGGCACGGAGGAAGGGCCAT 29874 ||| ||| |||| || || || || |||||||| Sbjct 44862 GCTGGAACA-GGCAGTGACAGGGCGGCAGGGCCAT 44829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405919783094164