Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrostomum_20lignano_20[genbank_20GCA_5F001188465.1_202015-07-29] 49,174 sequences; 1,040,124,789 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq2636 100 2e-16 seq1807 100 2e-16 seq767 100 2e-16 seq20824 93.3 4e-14 >seq2636 Length=142077 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 107556 ACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGC 107615 |||||||||| ||| |||||||| | |||| || |||| || ||||| || | | | Sbjct 25628 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 25687 Query 107616 GTAGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGC 107675 ||||| || || |||| |||||| ||| || || | ||||||||||||||||| Sbjct 25688 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 25747 Query 107676 ACGTGAAAACCGTGCAAGCCGCGCGGCA 107703 |||||||| |||||| |||| ||| || Sbjct 25748 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 25775 >seq1807 Length=57471 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 107556 ACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGC 107615 |||||||||| ||| |||||||| | |||| || |||| || ||||| || | | | Sbjct 43940 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 43999 Query 107616 GTAGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGC 107675 ||||| || || |||| |||||| ||| || || | ||||||||||||||||| Sbjct 44000 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 44059 Query 107676 ACGTGAAAACCGTGCAAGCCGCGCGGCA 107703 |||||||| |||||| |||| ||| || Sbjct 44060 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 44087 >seq767 Length=230551 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 107556 ACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGC 107615 |||||||||| ||| |||||||| | |||| || |||| || ||||| || | | | Sbjct 117434 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGTGGGTCCGTTTG 117493 Query 107616 GTAGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGC 107675 ||||| || || |||| |||||| ||| || || | ||||||||||||||||| Sbjct 117494 CACGGATTGAAATGAGCGCCAGCCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 117553 Query 107676 ACGTGAAAACCGTGCAAGCCGCGCGGCA 107703 |||||||| |||||| |||| ||| || Sbjct 117554 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 117581 >seq20824 Length=12435 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 107556 ACGTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGC 107615 |||||||||| ||| |||||||| | |||| || |||| || ||||| | | | ||| Sbjct 7223 ACGTTGCCCAGATCCCCGACGTGCCTCTCCTCGTCGTCCGGAGCGCCGGGGTCCGTTTGC 7282 Query 107616 GTAGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGC 107675 ||||| || || |||| ||||| ||| || || | ||||||||||||||||| Sbjct 7283 AC-GGATTGAAATGAGCGCCA-CCGACACGCAGCCGTTCGTATTGTCGCCAAATTCGTGC 7340 Query 107676 ACGTGAAAACCGTGCAAGCCGCGCGGCA 107703 |||||||| |||||| |||| ||| || Sbjct 7341 ACGTGAAAGCCGTGCTTGCCGGGCGCCA 7368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421558405120624