Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq276 136 4e-27 >seq276 Length=693516 Score = 136 bits (150), Expect = 4e-27 Identities = 405/623 (65%), Gaps = 55/623 (9%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||||||||| || || ||||| ||||| ||||| ||||| || || |||||| Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| || ||||| || | ||| ||||| || || || || || ||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || ||||| || | ||||| || | ||| || ||||| |||||| | ||| | | Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAACTAAACGCTCCGCAAACGTAGAGTGAGTATCGCCA 676800 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT-ATGGCCTT 16440 ||||| || | |||||| || || || | ||| || | ||| || ||||| || Sbjct 676801 ATCCAGTTAAGCGCCCATTGCGCCTTCTGCGCGACACATTCTA-GGTTGCTGATGGCGTT 676859 Query 16441 AAACA--ATTTCTCT-------TTTTC-----------CTGAA----------------- 16463 |||| | || || | || | ||| Sbjct 676860 GAACAGGAAATCGCTGCGAGAGTAGTCAATTGGAGAAGCGGAAACCTTACCGTTCTGTTG 676919 Query 16464 TATCGATTATATACGTATCAATCAGTAAACTG--TACATTTCTGAGTGTATGTTCTCTAT 16521 ||| | |||||||| |||||||| || || ||||||||||| ||||||||||| || Sbjct 676920 GATCTTTGATATACGTGTCAATCAG--AAGTGAATACATTTCTGAATGTATGTTCTCAAT 676977 Query 16522 GGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC--ACGTAAAAT 16579 || ||||| | || || || || ||| |||||| | ||| |||||| || ||| Sbjct 676978 CGCGATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAA-- 677035 Query 16580 CGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA----ATAT 16635 || || |||| ||||| ||| || || || ||||||||||| || || | |||| Sbjct 677036 CGCTCGACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATAT 677095 Query 16636 GTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGA 16695 | | ||||| | ||| | | ||| ||| ||||| ||||| ||||| Sbjct 677096 GAG----ATGAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGA 677151 Query 16696 TATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | ||| || ||||| |||||||| || ||||| || ||||| | | ||||| Sbjct 677152 GAGATCAACCTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAAC 677211 Query 16756 ATCATTGTATTGTATGGGAAATA 16778 ||| | |||||| ||||| |||| Sbjct 677212 ATCGTGGTATTGGATGGGGAATA 677234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511144526621120