Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq276 100 3e-16 seq46 93.3 5e-14 seq53 82.4 9e-11 >seq276 Length=693516 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| ||||| || |||||||| || | ||| || || || | Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| | ||| || ||||| ||||||||||| | || || ||||| |||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279 || || || ||||| |||||||||| Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAA 676765 >seq46 Length=2247445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 178/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 || || |||||||| | ||| ||| | | |||||| | | ||| ||||||| | Sbjct 183281 AAACCTGGACATTCGTGTGGATCCATGAGTGTCCACTCCTCATTGGCCTCCACTCGTCGC 183340 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 54096 || |||| ||| || ||||| || || ||| || | ||| | | | ||| ||| Sbjct 183341 ATGAAGATATCCGGTATCCAGAGGGC-ATAGAACAAATCCCGACCACGAATTTCTTCGGC 183399 Query 54097 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || ||||| ||| | || | |||| | | || | |||||||||||||| ||| Sbjct 183400 GCCAGTATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCACGGTTCCAGGTA 183459 Query 54157 TATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 54216 | || | | | || || ||||| ||||| ||||| || ||||| | ||| |||||||| Sbjct 183460 GACGGCGAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGAGCAGTGTTATT 183519 Query 54217 ATAAACTCTCAACATTGGAA 54236 | | || | ||||||||||| Sbjct 183520 AAACACACGCAACATTGGAA 183539 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 54322 CATT-TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 54380 |||| || ||||| | || ||| ||| | || ||||| || || || ||||| || | Sbjct 184812 CATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCTTCGATACTGTCGT 184871 Query 54381 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 54440 | |||| | | || |||||||| |||||||| | | | |||| || |||||| | Sbjct 184872 CTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTACCACTATTAAACA 184931 Query 54441 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491 ||| || ||||| || |||||||| || || || | |||||||||||||| Sbjct 184932 GGGTCGGTGAAGCATGGGTAAACCACTTCTCCGACATTAGATTGTACGTCT 184982 >seq53 Length=2095963 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 147887 GAGTA--TACGAGCCGGGAAAAAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGA 147944 ||||| ||||| || ||||| || ||||| ||||| || |||||||||||| ||| Sbjct 32561 GAGTACTTACGAACCTGGAAAGCGACACTGGTTGAAAATCAAACGAGACTATTTGGCCGA 32620 Query 147945 GGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTATGGTAAAGG-AG 148003 ||| || ||||| ||||| | |||||| | ||| | || || |||||||| | || | Sbjct 32621 GGGATCGATGGCCGATTCGGTCGATTTGATCGTATTGGGAGCGTACTATGGGACCGGTAA 32680 Query 148004 CAAAGG 148009 |||||| Sbjct 32681 CAAAGG 32686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593408293111680