Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq276 183 3e-41 seq168 120 3e-22 >seq276 Length=693516 Score = 183 bits (202), Expect = 3e-41 Identities = 418/633 (66%), Gaps = 37/633 (6%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| | || || || | |||||||| ||||||| || | |||| | || || Sbjct 677253 AACCCGCATCGATTTGTTCTATTCCCCATCCAATACCACGATGTTTGGCAGTTTTATAAG 677194 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 || || | || ||||| |||||||| || ||||| || || |||||||| | | Sbjct 677193 AAAGCAGTCGCATCGTTTTGGACCGTTGAAGAGGTTGATCTCTCCAAGGATTTTGGTCAT 677134 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| | | || | | |||||| || |||||| | ||| | || || || || Sbjct 677133 TGGGATAGTCTCAAGGTCGGCGAGCGTCACTTCATCTCATATGTGTTAGCATTCTTTGCT 677074 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || ||||| || || || ||||||||||||||||||||| |||||| || || || Sbjct 677073 GCAAGCGATGGAATAGTGCTAGAGAATCTGGTCGAGCGTTTCAGTCAGGAAGTTCAAGTT 677014 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||| ||||| || ||||| | |||||||| || |||||| | || || |||||| Sbjct 677013 CCGGAGGTTCGGTGTTTTTACGGGATGCAGATCGCGATTGAGAACATACATTCAGAAATG 676954 Query 116894 TATTCGACCCTCATCGACACGT-------------------ACG--------TGCGC-TC 116925 ||||| || || ||||||| ||| | ||| || Sbjct 676953 TATTCACTTCTGATTGACACGTATATCAAAGATCCAACAGAACGGTAAGGTTTCCGCTTC 676894 Query 116926 TTCGGAGGAGAA-----GCTCCGTT----TGTTGAACGCCATCGAGACGATGCCGTGCGT 116976 | | || | || || | |||| ||||||||| | | || || Sbjct 676893 TCCAATTGACTACTCTCGCAGCGATTTCCTGTTCAACGCCATCAGCAACCTAGAATGTGT 676834 Query 116977 CAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGA 117036 | ||||||| | |||||||| |||||| | || | | | | || | || Sbjct 676833 CGCGCAGAAGGCGCAATGGGCGCTTAACTGGATTGGCGATACTCACTCTACGTTTGCGGA 676774 Query 117037 GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCAT 117096 ||| | || ||||| || || ||||||||| | ||||| || ||||| |||||||| || Sbjct 676773 GCGTTTAGTTGCCTTTGCTGCAGTCGAGGGCATTTTCTTCTCTGGCAGCTTCGCCGCAAT 676714 Query 117097 ATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 ||||||||| || ||||||||| | ||||| || | || ||||| || || || ||| Sbjct 676713 ATTTTGGCTGAAAAAACGCGGCTTGATGCCTGGGTTAACCTTCAGTAATGAACTGATCAG 676654 Query 117157 CAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 || || || |||||||| |||||||| ||||| Sbjct 676653 TAGAGATGAAGGTCTGCACTGCGACTTCGCCTG 676621 >seq168 Length=1129759 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| || ||||| | || ||||| |||| Sbjct 736072 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCCAG 736013 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || |||| || || || |||||||| | |||| Sbjct 736012 TGACACAATTGAGAACG-TGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACC 735954 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| || || | ||| ||||||||| |||| |||| || || | ||||||| Sbjct 735953 AGCAACGCCTTATTTTCGCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTACA 735894 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||| ||| | || || || || ||| | ||| Sbjct 735893 ACATCCAGAAAGAGTCTACTCTTCACCTGGTGCTTCGC 735856 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || |||||||| |||||| |||| || || || | | Sbjct 735843 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAAACGATCACCCTCGAGGTTGAGGCTAGC 735784 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || || |||||||| | ||||| Sbjct 735783 GACACAATTGAGAACG-TGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 735725 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | ||| ||||| || |||| |||| || || | |||||||| Sbjct 735724 GCAACGCCTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAA 735665 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||| ||| | || |||| | || |||||| Sbjct 735664 CATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGC 735628 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || || || || || |||||| | || || ||||| | | Sbjct 774117 ATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 774058 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| || |||||||| | |||||| Sbjct 774057 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 773998 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| || || || | || ||| | || |||||| Sbjct 773997 CAACGCTTGATTTTTGCCGGCAAACAACTCGAAGATGGACGTACCTTATCGGATTACAAC 773938 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || ||||||||| |||| || || | || |||||| Sbjct 773937 ATTCAGAAGGAGTCCACTCTACACTTGGTTTTGCGC 773902 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || || |||||| | || || ||||| | Sbjct 775258 AATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 775199 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | |||| || || | ||||| || |||||||| | ||||| Sbjct 775198 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 775139 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | || |||||||| || || || | || || || || ||||| Sbjct 775138 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 775079 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || ||||| ||| | || || | || ||| Sbjct 775078 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 775030 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || || || || || || ||| | || || ||||| | | Sbjct 774345 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774286 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| || |||||||| | |||||| Sbjct 774285 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774226 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| || || || | || || || || |||||| Sbjct 774225 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774166 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || ||||| ||| | || || | || ||| Sbjct 774165 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || || || || || || ||| | || || ||||| | | Sbjct 774573 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774514 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| || |||||||| | |||||| Sbjct 774513 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774454 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| || || || | || || || || |||||| Sbjct 774453 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774394 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || ||||| ||| | || || | || ||| Sbjct 774393 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || || || || || || ||| | || || ||||| | | Sbjct 774801 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774742 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| || |||||||| | |||||| Sbjct 774741 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774682 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| || || || | || || || || |||||| Sbjct 774681 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774622 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || ||||| ||| | || || | || ||| Sbjct 774621 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || || || || || || ||| | || || ||||| | | Sbjct 775029 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774970 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || || | ||||| || |||||||| | |||||| Sbjct 774969 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774910 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || |||||||| || || || | || || || || |||||| Sbjct 774909 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774850 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| || ||||| ||| | || || | || ||| Sbjct 774849 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514947318828160