Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq168 140 5e-28 >seq168 Length=1129759 Score = 140 bits (154), Expect = 5e-28 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || |||||||| || || | ||| |||| || | Sbjct 735843 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAAACGATCACCCTCGAGGTTGAGGCTAGC 735784 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| || | || ||| ||||||||||| ||||| || |||||||| || Sbjct 735783 GACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 735724 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | |||||||| || || || ||||| ||||| |||| ||||| || || || Sbjct 735723 CAACGCCTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAAC 735664 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 || || ||||| || |||||||| |||||||| || | || ||||| |||| |||| Sbjct 735663 ATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCGTGGTGG--CTAAATATTC 735607 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| || || | ||||| || || ||||| || || ||| | ||| | || || Sbjct 736074 ACAATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCC 736015 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 | ||| |||||| || | || ||| ||||||||||| ||||| || |||||||| Sbjct 736014 AGTGACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGAC 735955 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | |||||||| || || ||||| || ||||| | || || || || || Sbjct 735954 CAGCAACGCCTTATTTTCGCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTAC 735895 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || ||| | || |||| | || | || |||||||| Sbjct 735894 AACATCCAGAAAGAGTCTACTCTTCACCTGGTGCTTCGCCTTCGTGGTGGTAT 735842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755057345868800