Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq168 105 6e-18 seq190 102 7e-17 >seq168 Length=1129759 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||||||||||| || |||||||| || || || || || Sbjct 735631 CAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 735690 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| | || || || ||| | || || || ||||| || || || ||||| ||||| || Sbjct 735691 CTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 735750 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||| || || || | || | ||||| | ||| ||||||| ||| | ||| Sbjct 735751 TTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCGT 735810 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||||| ||||| ||||| || ||||| Sbjct 735811 TTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | ||||||||||| || |||||||| || || || || ||||| Sbjct 735862 CACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTC 735921 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || ||| | || || || ||||| || || || ||||| ||||| ||| Sbjct 735922 CAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTG 735981 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||||| || ||||||||| | || | ||| || Sbjct 735982 AATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCTT 736041 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 736042 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | || ||||| || |||||||||||||| | || || ||| Sbjct 773905 CAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATC 773964 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||||| || || | || | || ||||| ||||| || ||||| |||||||| Sbjct 773965 TTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774024 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCG 118704 | || || || || | || | || || | |||| || || || | ||| | || Sbjct 774025 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGGTGATCG 774083 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || || || ||||| || || || ||||||||| Sbjct 774084 TCTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || || ||||| || ||||||||||| || ||| || ||| || Sbjct 774136 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774195 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || || | || | || ||||| ||||| || ||||| ||||||||| Sbjct 774196 AAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTG 774255 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | || || | |||| || || || | ||| | ||| | Sbjct 774256 GATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGGTAATCGTCT 774314 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||||||| || || || || ||||||||| Sbjct 774315 TACCGGTCAGGGTCTTCACGAATATCTGCATG 774346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || || ||||| || ||||||||||| || ||| || ||| || Sbjct 774364 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774423 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || || | || | || ||||| ||||| || ||||| ||||||||| Sbjct 774424 AAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTG 774483 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | || || | |||| || || || | ||| | ||| | Sbjct 774484 GATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGGTAATCGTCT 774542 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||||||| || || || || ||||||||| Sbjct 774543 TACCGGTCAGGGTCTTCACGAATATCTGCATG 774574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || || ||||| || ||||||||||| || ||| || ||| || Sbjct 774592 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774651 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || || | || | || ||||| ||||| || ||||| ||||||||| Sbjct 774652 AAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTG 774711 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | || || | |||| || || || | ||| | ||| | Sbjct 774712 GATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGGTAATCGTCT 774770 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||||||| || || || || ||||||||| Sbjct 774771 TACCGGTCAGGGTCTTCACGAATATCTGCATG 774802 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || || ||||| || ||||||||||| || ||| || ||| || Sbjct 774820 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774879 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || || | || | || ||||| ||||| || ||||| ||||||||| Sbjct 774880 AAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTG 774939 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | || || | |||| || || || | ||| | ||| | Sbjct 774940 GATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCT-TCAACTTCAAGGGTAATCGTCT 774998 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||||||| || || || || ||||||||| Sbjct 774999 TACCGGTCAGGGTCTTCACGAATATCTGCATG 775030 >seq190 Length=1055212 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| |||||||||||||| | ||| || ||||| ||||| ||||| Sbjct 796600 GTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGGCCGTCCTCCAGCTGCTTTCCC 796541 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||||| ||||| ||||| || |||||||||||| ||| || ||| Sbjct 796540 GCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCCTCCTTGTCTTGAATCTTGGCTTTG 796481 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||||| ||| |||| ||| || ||||| | || | || || || || || || Sbjct 796480 ACATTTTCGATGGTATCCGACGCT-TCAACCTCAAGTGTAATGGTCTTTCCCGTGAGTGT 796422 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 796421 CTTGACGAAGATCTGCAT 796404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433607191005472