Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq127 100 3e-16 seq168 98.7 1e-15 seq83 98.7 1e-15 seq98 96.9 4e-15 seq245 95.1 1e-14 seq176 95.1 1e-14 seq81 95.1 1e-14 seq7 89.7 6e-13 seq174 86.0 7e-12 seq388 84.2 2e-11 seq666 82.4 9e-11 >seq127 Length=1396385 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 150222 AAAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 150281 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 150282 GACCACTATACTACCGAGGA 150301 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 150461 AAAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 150520 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 150521 GACCACTATACTACCGAGGA 150540 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 151197 AAAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 151138 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 151137 GACCACTATACTACCGAGGA 151118 >seq168 Length=1129759 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| ||||| ||||| || ||| || || || ||||| |||| || || || || Sbjct 735629 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 735688 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | ||||| || ||||| || || || |||||||| | || | || ||||| Sbjct 735689 TCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735748 Query 43089 TCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| | || | | ||| | | | |||||||| | || || |||| ||||| Sbjct 735749 TCT-TGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGAT 735807 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || || || || |||||||||||||| Sbjct 735808 CGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq83 Length=1684914 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| || |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 682489 AAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTG 682548 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 682549 ACCACTATACTACCGAGGA 682567 >seq98 Length=1542432 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| | |||| |||| ||||||||||||| || || || ||||||||||||| || Sbjct 118235 TGGAAAAGCTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGAT 118294 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 118295 ACTGACCACTATACTACCGAGGA 118317 >seq245 Length=819584 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 386800 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTGACCACTA 386741 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 386740 TACTACCGAGGA 386729 >seq176 Length=1095775 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 841409 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTGACCACTA 841468 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 841469 TACTACCGAGGA 841480 >seq81 Length=1739609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 352208 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTGACCACTA 352149 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 352148 TACTACCGAGGA 352137 >seq7 Length=4781351 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| || |||| |||| |||| |||||||| || || || || |||||||||| ||||| Sbjct 3036963 AAAATTGCTCCCCGGCCGGGACTCGAACCCGGGCCTTCCACGCGACAGGCGGAGATACTG 3036904 Query 60119 ACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 3036903 ACCACTATACTACCGAGGA 3036885 >seq174 Length=1099092 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 717503 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTGACCACTA 717444 Query 60126 TACTACC 60132 ||||||| Sbjct 717443 TACTACC 717437 >seq388 Length=466987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||||||||| ||| ||||||||| || || || ||||||||||||| | | Sbjct 84211 AAAAAATGTCTCCTCGGCCGGGCATCGAACCCGGGCCTTCCACGTGACAGGCGGATCTGC 84270 Query 60117 TCACCACTATACTACCGAG 60135 | |||||||||| |||||| Sbjct 84271 TGACCACTATACAACCGAG 84289 >seq666 Length=114481 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | || |||||| | ||| ||||||||||| |||||||||| ||||| || Sbjct 72281 AAACGGATCATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGA 72222 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || | ||||||||| || || || | |||||||| || | || | || |||| Sbjct 72221 CCGTCTTCCAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 72162 Query 43086 TTGTC 43090 || || Sbjct 72161 TTATC 72157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571515851852480