Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq168 113 4e-20 seq190 96.9 3e-15 >seq168 Length=1129759 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||||| || ||| ||||| ||||||||||| || | ||| |||| Sbjct 735632 AAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCC 735691 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || |||||||| || | || || ||||| || || | || ||||| || Sbjct 735692 TCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 735751 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| || ||| || | | | |||| | | |||| ||||| | ||| ||||| Sbjct 735752 TGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCGTT 735811 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||| || ||||||||||||||||| Sbjct 735812 TTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGT-CGTTCAGTTGGCGATCGTC 45183 || |||||||| || ||| |||||||||||||||||| | || | || | || | || Sbjct 773906 AAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGT-ACGTCCATC 773964 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || |||||||| ||||| || ||||| || || |||||||| || | || |||||||| Sbjct 773965 TTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774024 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 || || ||| || | | | | || | | || || || | ||| ||||| Sbjct 774025 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGT 774084 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || || ||||||||||| || || |||||| Sbjct 774085 CTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||| ||||| ||||||||||| || || |||| ||| Sbjct 735863 ACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTCC 735922 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| |||||||| || | || || ||||| || || | || ||||| || | Sbjct 735923 AACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 735982 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||| ||||| | || ||||||||| Sbjct 735983 ATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCTTG 736042 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 736043 CCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 >seq190 Length=1055212 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || | || | |||| ||||| ||| || |||||||||||||| || Sbjct 796631 GCCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGA 796572 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| ||||| || ||||| ||||| ||||| |||||||| || ||||| Sbjct 796571 AAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGG 796512 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||| || || || | | | | ||| | || || Sbjct 796511 GATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAAC 796452 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| | ||||| ||||| ||||| || ||||| || ||||| ||||| || Sbjct 796451 CTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394871930846536