Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq168 116 3e-21 >seq168 Length=1129759 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || || ||| | ||||| || ||||| ||| | || || ||| | || Sbjct 774346 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774287 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | | || | ||| |||| || || | || |||||| | || ||||| Sbjct 774286 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774227 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTAC 25008 |||||| || || | ||| ||||||||||| |||||| || | ||| || |||||| Sbjct 774226 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGA--ACTCTGTCTGATTAC 774169 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| |||||||| |||| |||||| | ||| | || |||| || || Sbjct 774168 AACATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774119 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || || ||| | ||||| || ||||| ||| | || || ||| | || Sbjct 774574 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774515 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | | || | ||| |||| || || | || |||||| | || ||||| Sbjct 774514 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774455 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTAC 25008 |||||| || || | ||| ||||||||||| |||||| || | ||| || |||||| Sbjct 774454 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGA--ACTCTGTCTGATTAC 774397 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| |||||||| |||| |||||| | ||| | || |||| || || Sbjct 774396 AACATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774347 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || || ||| | ||||| || ||||| ||| | || || ||| | || Sbjct 774802 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774743 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | | || | ||| |||| || || | || |||||| | || ||||| Sbjct 774742 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774683 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTAC 25008 |||||| || || | ||| ||||||||||| |||||| || | ||| || |||||| Sbjct 774682 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGA--ACTCTGTCTGATTAC 774625 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| |||||||| |||| |||||| | ||| | || |||| || || Sbjct 774624 AACATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774575 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || || ||| | ||||| || ||||| ||| | || || ||| | || Sbjct 775030 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774971 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | | || | ||| |||| || || | || |||||| | || ||||| Sbjct 774970 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774911 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTAC 25008 |||||| || || | ||| ||||||||||| |||||| || | ||| || |||||| Sbjct 774910 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGA--ACTCTGTCTGATTAC 774853 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| |||||||| |||| |||||| | ||| | || |||| || || Sbjct 774852 AACATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774803 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || || || | || || || ||||| ||| | || || ||| | ||| Sbjct 775257 ATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 775198 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | || | ||| |||| || || | || |||||| | || |||||| Sbjct 775197 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 775138 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 ||||| || || | ||| ||||||||||| |||||| || | ||| || ||||||| Sbjct 775137 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGA--ACTCTGTCTGATTACA 775080 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| |||||||| |||| |||||| | ||| | || |||| || || Sbjct 775079 ACATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 775031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||| || || || | || || || ||||| ||| | || || ||| | || Sbjct 774118 CATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 774059 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||| | | | || | ||| |||| || || | || |||||| | || ||||| Sbjct 774058 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 773999 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGAC-TA--TGAAC-GATT 25006 |||||| || || | ||| ||||||||||| |||||| ||| || | | | |||| Sbjct 773998 GCAACGCTTGATTTTTGCCGGCAAACAACTCGAAGAT----GGACGTACCTTATCGGATT 773943 Query 25007 ACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCA 25065 ||| ||| ||||| ||| |||| || || || || || || | || || || ||||| Sbjct 773942 ACAACATTCAGAAGGAGTCCACTCTACACTTGGTTTTGCGCCTTCGTGGTGGCTAATCA 773884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418088779454720