Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq276 159 3e-34 seq168 122 8e-23 seq46 95.1 1e-14 >seq276 Length=693516 Score = 159 bits (176), Expect = 3e-34 Identities = 540/841 (64%), Gaps = 49/841 (6%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 ||||| || ||| || || || | | ||||||| | || || || |||| | || Sbjct 677271 GAACCTCTGTTGAAACCAAACCCGCATCGATTTGTTCTATTCCCCATCCAATACCACGAT 677212 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 ||||| | | || || || |||| ||||||||||||||||| ||||| || || || Sbjct 677211 GTTTGGCAGTTTTATAAGAAAGCAGTCGCATCGTTTTGGACCGTTGAAGAGGTTGATCTC 677152 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 || |||||| | | |||||||| ||||| | ||| | | || || | | Sbjct 677151 TCCAAGGATTTTGGTCATTGGGATAGTCTCAAGGTCGGCGAGCGTCACTTCATCTCATAT 677092 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 ||||| || || || || ||| |||||| || || |||||| ||||||| | || Sbjct 677091 GTGTTAGCATTCTTTGCTGCAAGCGATGGAATAGTGCTAGAGAATCTGGTCGAGCG--TT 677034 Query 57750 TCA--CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTG 57807 ||| || ||||| ||||| |||||| | || |||||||| | || | || |||| Sbjct 677033 TCAGTCAGGAAGTTCAAGTTCCGGAGGTTCGGTGTTTTTACGGGATGCAGATCGCGATTG 676974 Query 57808 AAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAAC-- 57863 | ||| | ||||||||||||||||| || || || || ||||| | || || |||| Sbjct 676973 AGAACATACATTCAGAAATGTATTCACTTCTGATTGACACGTATATCAAAGATCCAACAG 676914 Query 57864 ---------------------------GACGA-----GAAACG-TAGACTGTTCAACGCG 57890 ||| | | | || | ||||||||||| Sbjct 676913 AACGGTAAGGTTTCCGCTTCTCCAATTGACTACTCTCGCAGCGATTTCCTGTTCAACGCC 676854 Query 57891 ATC-GAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 ||| | ||| | | | |||| ||||||| | ||| | | || ||||| | Sbjct 676853 ATCAGCAACCTAGAATGTG-TCGCGCAGAAGGCGCAATGGGCGCTTAACTGGAT---TGG 676798 Query 57950 CGCCAC---GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 || || | ||||| || ||| | || | || || || || ||||| || || || Sbjct 676797 CGATACTCACTCTACGTTTGCGGAGCGTTTAGTTGCCTTTGCTGCAGTCGAGGGCATTTT 676738 Query 58007 CTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 ||| || |||||||| || |||||||||||| |||| ||||||||| ||||||| || | Sbjct 676737 CTTCTCTGGCAGCTTCGCCGCAATATTTTGGCTGAAAAAACGCGGCTTGATGCCTGGGTT 676678 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 || || || || || |||| | || || ||||| || || || || ||| | Sbjct 676677 AACCTTCAGTAATGAACTGATCAGTAGAGATGAAGGTCTGCACTGCGACTTCGCCTGCAT 676618 Query 58127 AATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGA 58186 | ||| ||||||| | || || | |||||| | | | ||| || | || Sbjct 676617 GTTATACAAATACATTGTTCAAAAGCCTGCAAAGGATCGTGTGCTTGCCATCATTAAGGA 676558 Query 58187 GGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTAT 58246 ||| || | |||||| | | || | | || || | |||||| || | ||||| Sbjct 676557 GGCAGTAGAAATCGAACAAAATTTCCTGTCGGATGCTTTGCCGGTGAGTTTGATTGGTAT 676498 Query 58247 GAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306 |||| | ||||||| |||||||| || |||| ||| | |||||| | ||||| Sbjct 676497 GAACTGCAAGTTGATGTGTCGCTACATTGAATTCATTGCGGACCGGCTTTTGGTTGAACT 676438 Query 58307 G 58307 | Sbjct 676437 G 676437 >seq168 Length=1129759 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || ||||||||| | || |||||| | | Sbjct 775257 ATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 775198 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || || || |||||||||||| | || ||||||||| Sbjct 775197 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 775138 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || || |||||||| | ||||| | ||| || ||||| ||| Sbjct 775137 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 775078 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| |||||||||||||| ||| | ||| | || || Sbjct 775077 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 775031 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| || || ||||| ||| | || |||||| | Sbjct 774346 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774287 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | || | || || || || |||||||||||| | || |||||||| Sbjct 774286 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774227 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || || || |||||||| | ||||| | ||| || ||||| || Sbjct 774226 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774167 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| |||||||||||||| ||| | ||| | || || Sbjct 774166 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774119 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| || || ||||| ||| | || |||||| | Sbjct 774574 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774515 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | || | || || || || |||||||||||| | || |||||||| Sbjct 774514 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774455 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || || || |||||||| | ||||| | ||| || ||||| || Sbjct 774454 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774395 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| |||||||||||||| ||| | ||| | || || Sbjct 774394 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774347 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| || || ||||| ||| | || |||||| | Sbjct 774802 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774743 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | || | || || || || |||||||||||| | || |||||||| Sbjct 774742 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774683 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || || || |||||||| | ||||| | ||| || ||||| || Sbjct 774682 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774623 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| |||||||||||||| ||| | ||| | || || Sbjct 774622 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774575 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| || || ||||| ||| | || |||||| | Sbjct 775030 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774971 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | || | || || || || |||||||||||| | || |||||||| Sbjct 774970 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774911 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || || || |||||||| | ||||| | ||| || ||||| || Sbjct 774910 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774851 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| |||||||||||||| ||| | ||| | || || Sbjct 774850 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGG 774803 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||||| | || || || | Sbjct 736071 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCCAGT 736012 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || || ||||||||| | || || |||||| Sbjct 736011 GACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 735952 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||| |||||||||||||| ||| || || || || ||| Sbjct 735951 CAACGCCTTATTTTCGCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTACAAC 735892 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || |||||||| ||||| ||| | || | || |||| Sbjct 735891 ATCCAGAAAGAGTCTACTCTTCACCTGGTGCTTCGCCTTCGTGGTGGTA 735843 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || ||||| ||||||||||||||| |||| ||||| | | Sbjct 735843 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAAACGATCACCCTCGAGGTTGAGGCTAGC 735784 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || || ||||||||| | || || |||||| Sbjct 735783 GACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 735724 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||| ||||| || ||||| ||| | || || || || ||| Sbjct 735723 CAACGCCTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAAC 735664 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || ||||| || ||| | || |||| Sbjct 735663 ATCCAGAAAGAGTCTACTTTGCACTTGGT 735635 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||||| || || || ||||||||| | || |||||| | Sbjct 774118 CATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 774059 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | | || | || || || || |||||||||||| | || |||||||| Sbjct 774058 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 773999 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| || | || || || |||||||| | ||||| | | | || | ||||| | Sbjct 773998 GCAACGCTTGATTTTTGCCGGCAAACAACTCGAAGA-TGGACGTACCTTATCGGATTACA 773940 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||||| || || || ||||| || |||| Sbjct 773939 ACATTCAGAAGGAGTCCACTCTACACTTGGT 773909 >seq46 Length=2247445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || |||| ||| || | |||||||||||| || || ||||||| || || | || Sbjct 183329 TCCACTCGTCGCATGAAGATATCCGGTATCCAGAGGGCATAGAACAAATCCCGACCACGA 183388 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 | || || ||| || || ||| || || | || | | ||||||| ||||||| Sbjct 183389 ATTTCTTCGGCGCCAGTATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCAC 183448 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 || || ||||| ||||| || || || || | ||||| || ||||| |||| ||| || Sbjct 183449 GGTTCCAGGTAGACGGCGAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGA 183508 Query 23522 GCCGTGTTGTTGTACAC 23538 || ||||| || |||| Sbjct 183509 GCAGTGTTATTAAACAC 183525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445531169070720