Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq276 145 1e-29 seq46 104 3e-17 seq53 89.7 6e-13 >seq276 Length=693516 Score = 145 bits (160), Expect = 1e-29 Identities = 244/353 (69%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||| || || |||| ||| ||||||||| ||||| ||||| ||||| || Sbjct 676921 ATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCGC 676980 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 ||||| | ||||| ||||| | | |||| | || || ||||| || || || || Sbjct 676981 GATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTC 677040 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | | ||| || |||||||||||| || || ||||| || || || |||| | || Sbjct 677041 GACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGAT 677100 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 || | ||| | | || ||| ||||| | | ||| || || | ||| || Sbjct 677101 GAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGAGAGATCAAC 677160 Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 34141 ||||| || |||||||| ||||| |||| || ||||| | | ||| | || || || Sbjct 677161 CTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTA 677220 Query 34142 TTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATAGGTTCCA 34194 |||||| ||||| | |||||||| || || |||||| | | |||||||| Sbjct 677221 TTGGATGGGGAATAGAACAAATCGATGCGGGTTTGGTTTCAACAGAGGTTCCA 677273 Score = 109 bits (120), Expect = 7e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||||||||| || |||||||| || | ||| ||| || || | Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | ||| || ||||| ||||||||||| | ||||| || || ||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAA 33726 || || || |||||||||||||||| Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAA 676765 >seq46 Length=2247445 Score = 104 bits (114), Expect = 3e-17 Identities = 128/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 63560 CATT-TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 |||| || ||||| | || ||| ||| | |||||||| || ||||| || || || | Sbjct 184812 CATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCTTCGATACTGTCGT 184871 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | |||| | | || |||||||| |||||||| | | |||||| || |||||| | Sbjct 184872 CTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTACCACTATTAAACA 184931 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63732 ||| || ||||| || |||||||| || || || | |||||||||||||| || Sbjct 184932 GGGTCGGTGAAGCATGGGTAAACCACTTCTCCGACATTAGATTGTACGTCTGAA 184985 Score = 95.1 bits (104), Expect = 2e-14 Identities = 175/254 (69%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 |||||||| | ||| ||| | | |||||| | | ||| ||||||| ||| ||| Sbjct 183287 GGACATTCGTGTGGATCCATGAGTGTCCACTCCTCATTGGCCTCCACTCGTCGCATGAAG 183346 Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 | ||| || ||||| || || ||| || | ||| | | | ||| ||| || || Sbjct 183347 ATATCCGGTATCCAGAGGGC-ATAGAACAAATCCCGACCACGAATTTCTTCGGCGCCAGT 183405 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||| ||| | || | |||| | | || | |||||||||||||| ||| | ||| Sbjct 183406 ATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCACGGTTCCAGGTAGACGGC 183465 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || ||||| ||||| ||||| || ||||| | ||| ||||||||| | || Sbjct 183466 GAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGAGCAGTGTTATTAAACAC 183525 Query 63461 TCTCAACATTGGAA 63474 | ||||||||||| Sbjct 183526 ACGCAACATTGGAA 183539 >seq53 Length=2095963 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 155815 TACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGAGGGTTCC 155874 |||||||| |||||| || ||||| ||||| || |||||||||||| |||||| || Sbjct 32568 TACGAACCTGGAAAGCGACACTGGTTGAAAATCAAACGAGACTATTTGGCCGAGGGATCG 32627 Query 155875 ATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCCTACTATGG 155918 ||||| ||||| | |||||| | ||| | || || |||||||| Sbjct 32628 ATGGCCGATTCGGTCGATTTGATCGTATTGGGAGCGTACTATGG 32671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629485245252480