Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq276 100 4e-16 seq46 96.9 5e-15 seq53 91.5 2e-13 >seq276 Length=693516 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| ||||| || |||||||| || | ||| || || || | Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 || ||||| | ||| || ||||| ||||||||||| | || || ||||| |||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAA 36302 || || || ||||| |||||||||| Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAA 676765 >seq46 Length=2247445 Score = 96.9 bits (106), Expect = 5e-15 Identities = 179/260 (69%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 || || |||||||| | ||| ||| | | |||||| | | ||| ||||||| | Sbjct 183281 AAACCTGGACATTCGTGTGGATCCATGAGTGTCCACTCCTCATTGGCCTCCACTCGTCGC 183340 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTT 66127 || |||| ||| || ||||| || || ||| || ||||| | | | ||| ||| Sbjct 183341 ATGAAGATATCCGGTATCCAGAGGGC-ATAGAACAAATCCCGACCACGAATTTCTTCGGC 183399 Query 66128 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTA 66187 || ||||| ||| | || | |||| | | || |||||||||||||| ||| Sbjct 183400 GCCAGTATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCACGGTTCCAGGTA 183459 Query 66188 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 66247 | ||| | | | || || ||||| ||||| ||||| || ||||| | ||| |||||||| Sbjct 183460 GACGGCGAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGAGCAGTGTTATT 183519 Query 66248 ATAAACTCTCAACATTGGAA 66267 | | || | ||||||||||| Sbjct 183520 AAACACACGCAACATTGGAA 183539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 66353 CATT-TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 66411 |||| || ||||| | || ||| ||| | || ||||| || || || ||||| || | Sbjct 184812 CATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCTTCGATACTGTCGT 184871 Query 66412 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 66471 | |||| | | || |||||||| |||||||| | | | |||| || |||||| | Sbjct 184872 CTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTACCACTATTAAACA 184931 Query 66472 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 66525 ||| || ||||| || |||||||| || || || | |||||||||||||| || Sbjct 184932 GGGTCGGTGAAGCATGGGTAAACCACTTCTCCGACATTAGATTGTACGTCTGAA 184985 >seq53 Length=2095963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 159001 GAGTA--TACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGA 159058 ||||| |||||||| |||||| || ||||| ||||| || |||||||||||| ||| Sbjct 32561 GAGTACTTACGAACCTGGAAAGCGACACTGGTTGAAAATCAAACGAGACTATTTGGCCGA 32620 Query 159059 GGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTATGGTAAAGG-AT 159117 ||| || ||||| ||||| | |||||| | ||| | || || |||||||| | || | Sbjct 32621 GGGATCGATGGCCGATTCGGTCGATTTGATCGTATTGGGAGCGTACTATGGGACCGGTAA 32680 Query 159118 CAAAGG 159123 |||||| Sbjct 32681 CAAAGG 32686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657825482213440