Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09]
42,216 sequences; 620,452,578 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq168 96.9 3e-15
>seq168
Length=1129759
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | |||||||| ||||| | ||||||||||| || ||||| || ||
Sbjct 735616 GCCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGA 735675
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| ||| | ||| || | || || || || | || || |||||||| || || ||
Sbjct 735676 CAATGTACGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGG 735735
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|||||||| || || ||| | || | || | | || | ||||||| | | ||| |
Sbjct 735736 GATGCCTTCCTTATC-TTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAA 735794
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | ||| | ||| ||||| |||| ||||| || || |||||||||
Sbjct 735795 CCTCGAGGGTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCATA 735844
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| ||||||||||| || ||||| || || || || | ||| || | |||
Sbjct 735868 GTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTCCAACTG 735927
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||| || || | || || |||||||| || || || |||||||| || || ||| | |
Sbjct 735928 TTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT-TGAATCT 735986
Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | || | | || | |||||| ||| ||| ||||||| || | |||||||||||
Sbjct 735987 TCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCTTGCCGG 736046
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
||| ||| || ||||| || |||||
Sbjct 736047 TCAGCGTCTTCACGAAGATCTGCAT 736071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495802227027200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |