Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq276 152 7e-32 seq46 100 4e-16 seq53 86.0 9e-12 >seq276 Length=693516 Score = 152 bits (168), Expect = 7e-32 Identities = 416/638 (65%), Gaps = 42/638 (7%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||||||||| || |||||||| || ||||| || || || | Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| | ||| || ||||| ||||||||||| | || || ||||| ||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGT 50136 || || || ||||| ||||||||||| | | ||| || | | | | | || Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAACTAAACGCTCCGCAAACGTAGAGTGAGTATCGCCA 676800 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATT 50195 ||||| || | ||||| | ||||||| |||| | | ||| || ||||| || Sbjct 676801 ATCCAGTTAAGCGCCCATTGCGCCTTCTGCGCGACAC-ATTCTAGGTTGCTGATGGCGTT 676859 Query 50196 AAA--------------GAGA-TAGt---tt---------------tt----ttCATTAC 50218 || |||| |||| || || ||| | Sbjct 676860 GAACAGGAAATCGCTGCGAGAGTAGTCAATTGGAGAAGCGGAAACCTTACCGTTCTGTTG 676919 Query 50219 TATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 50278 |||||| | ||| || || |||| ||| ||||||||| ||||| ||||| ||||| | Sbjct 676920 GATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCG 676979 Query 50279 CCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTT 50338 | ||||| | ||||| ||||| | | |||| | || || ||||| || || || | Sbjct 676980 CGATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCT 677039 Query 50339 CAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 50398 | | | ||| || ||||||||| || || || ||||| || || || |||| | | Sbjct 677040 CGACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGA 677099 Query 50399 TAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTA 50458 | || || ||| | | || ||| ||||| | | ||| || || | ||| | Sbjct 677100 TGAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGAGAGATCAA 677159 Query 50459 CTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 50518 | ||||| || |||||||| ||||| |||| || ||||| | | ||| | || || | Sbjct 677160 CCTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGT 677219 Query 50519 ATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 ||||||| ||||| | |||||||| || || |||||| Sbjct 677220 ATTGGATGGGGAATAGAACAAATCGATGCGGGTTTGGT 677257 >seq46 Length=2247445 Score = 100 bits (110), Expect = 4e-16 Identities = 196/287 (68%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || || || || ||||| ||| ||| || |||||||||| ||| ||| | | | Sbjct 183254 TCAAATTCCTCACCCCACTTATCAGGTAAACCTGGACATTCGTGTGGATCCATGAGTGTC 183313 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 ||||| ||| ||| |||||| ||| |||| ||| || ||||| || || ||| || Sbjct 183314 CACTCCTCATTGGCCTCCACTCGTCGCATGAAGATATCCGGTATCCAGAGGGC-ATAGAA 183372 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 | ||| | | | || ||| || ||||| ||| | || | |||| | Sbjct 183373 CAAATCCCGACCACGAATTTCTTCGGCGCCAGTATTTTTTCGCATTTCAATGAACTGGAG 183432 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | || | |||||||||||||| ||| | ||| | | | || || ||||| ||||| || Sbjct 183433 GACGTCCGGATGCCACGGTTCCAGGTAGACGGCGAAAGCACCGGGGCGTTTATTTCCACC 183492 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 80146 ||| || ||||| | ||| ||||||||| | || | ||||||||||| Sbjct 183493 CTGGTCGATGTAGCGAGCAGTGTTATTAAACACACGCAACATTGGAA 183539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 80232 CATT-TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCAT 80290 |||| || ||||| | || ||| ||| | || ||||| || || || || || || | Sbjct 184812 CATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCTTCGATACTGTCGT 184871 Query 80291 CAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 80350 | |||| | | || |||||||| |||||||| | | | |||| || |||||| | Sbjct 184872 CTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTACCACTATTAAACA 184931 Query 80351 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 80404 ||| || ||||| || |||||||| || || |||| |||||||||||||| || Sbjct 184932 GGGTCGGTGAAGCATGGGTAAACCACTTCTCCGACATTAGATTGTACGTCTGAA 184985 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || ||||| || |||||||||||| ||||||||| | || || ||||| ||| || Sbjct 181354 ATCTCAGTACACAGGTTACTACACCGAATGGTTCCCAGATGCTGGTGATTGGACTTCCTG 181413 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 || || || || || || || ||||||||||| || ||||| ||||||| Sbjct 181414 TTGCAAGCGTCTTTGTACAGCATGAACGGAGTTCCGGTTTCGATCTGAG 181462 >seq53 Length=2095963 Score = 86.0 bits (94), Expect = 9e-12 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 174249 GAGTA--TACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGA 174306 ||||| |||||||| |||||| || ||||| ||||| || |||||||||||| ||| Sbjct 32561 GAGTACTTACGAACCTGGAAAGCGACACTGGTTGAAAATCAAACGAGACTATTTGGCCGA 32620 Query 174307 GGGTTCTATGGCAGATTCTGCAGATTTAGTAGTACTAGGTGCTTACTATGGTAAAGG-AG 174365 ||| || ||||| ||||| | ||||| | ||| | || || |||||||| | || | Sbjct 32621 GGGATCGATGGCCGATTCGGTCGATTTGATCGTATTGGGAGCGTACTATGGGACCGGTAA 32680 Query 174366 CAAAGG 174371 |||||| Sbjct 32681 CAAAGG 32686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717889769554240